Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_E09
(422 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_03_0935 - 22738221-22738328,22739207-22739237,22739901-227400... 27 4.7
01_07_0310 + 42660671-42660795,42660996-42661026,42662958-426630... 27 4.7
01_03_0107 - 12613491-12613538,12613906-12614139,12614682-126147... 27 4.7
01_01_0513 + 3736893-3737047,3737298-3737340,3737631-3737765,373... 27 4.7
01_06_0192 + 27347369-27348826,27349124-27349264,27349350-273510... 27 6.2
06_01_0247 + 1863549-1863978,1865001-1865261,1865346-1866221,186... 27 8.2
05_04_0299 - 19958776-19958858,19958883-19959012,19960131-199601... 27 8.2
03_05_0407 - 23906388-23906966,23907028-23907915,23908141-239087... 27 8.2
>07_03_0935 -
22738221-22738328,22739207-22739237,22739901-22740095,
22740693-22740782,22740900-22741037,22741959-22742108,
22743589-22744766
Length = 629
Score = 27.5 bits (58), Expect = 4.7
Identities = 28/105 (26%), Positives = 47/105 (44%), Gaps = 2/105 (1%)
Frame = +2
Query: 74 YLHMNYPYWMTDEVYGLNKERQGEILMYANSQLLARLRMERLSHKMCDIKMFMWNEPVKN 253
++ N P W YG+ +R E L+ + + + E L +++ F E VK
Sbjct: 344 FMVWNSPQW----AYGVRHQRGLESLLRQHPEACVVMLSETL-----ELEFFQ--EFVKE 392
Query: 254 GYWPKIRLPNGDEM--PVRQNNFVPVTSENLKLKMLLDDVEQMIR 382
GY + LPN DE+ ++FV V +E K K +++R
Sbjct: 393 GYKVAVALPNLDELLEGTLTHDFVSVWNEWRKTKYYPLHYSELVR 437
>01_07_0310 +
42660671-42660795,42660996-42661026,42662958-42663079,
42663428-42663544,42663881-42663950
Length = 154
Score = 27.5 bits (58), Expect = 4.7
Identities = 13/46 (28%), Positives = 20/46 (43%)
Frame = +2
Query: 248 KNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIRE 385
K +W ++ D P N +PV + N K K QM+R+
Sbjct: 100 KVNFWRRLSQMKADHEPSASNKRLPVINHNYKSKRYATLTPQMMRQ 145
>01_03_0107 -
12613491-12613538,12613906-12614139,12614682-12614713,
12616021-12616176,12617972-12618159,12618242-12618324,
12618821-12618976,12620320-12621162,12621197-12621550,
12621962-12623125
Length = 1085
Score = 27.5 bits (58), Expect = 4.7
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 2 RRSLSEDDKYSYFTEDVDLNTYMYYLHMN 88
+ SL + KY +E DL + YY H+N
Sbjct: 652 KNSLINNTKYIVLSESGDLQVWRYYKHVN 680
>01_01_0513 +
3736893-3737047,3737298-3737340,3737631-3737765,
3737879-3738010,3738129-3738278,3738353-3738373,
3738468-3738675,3738796-3738877,3738983-3739088,
3739245-3739358,3739458-3739685
Length = 457
Score = 27.5 bits (58), Expect = 4.7
Identities = 14/48 (29%), Positives = 22/48 (45%), Gaps = 2/48 (4%)
Frame = +2
Query: 215 DIKMFM--WNEPVKNGYWPKIRLPNGDEMPVRQNNFVPVTSENLKLKM 352
D K F+ W E N WP + +P G ++Q F +K++M
Sbjct: 109 DTKAFLAAWEETCNNEGWPILIIPGGRTFLLKQIKFNGSCKSPIKIQM 156
>01_06_0192 +
27347369-27348826,27349124-27349264,27349350-27351081,
27353739-27354606,27354784-27355957
Length = 1790
Score = 27.1 bits (57), Expect = 6.2
Identities = 14/38 (36%), Positives = 20/38 (52%)
Frame = +2
Query: 281 NGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMIREGIL 394
NGDE+P +NN T + + + LL EQ + E L
Sbjct: 306 NGDELPCNENNAEDGTGSSHEHEHLLVQNEQTVEESNL 343
>06_01_0247 +
1863549-1863978,1865001-1865261,1865346-1866221,
1866344-1866813
Length = 678
Score = 26.6 bits (56), Expect = 8.2
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -1
Query: 137 DALCSNRTLRQSSNTDNSYEGNTC 66
D R + QS+NTDN EG+ C
Sbjct: 276 DGTVKTRQVPQSANTDNHCEGSGC 299
>05_04_0299 -
19958776-19958858,19958883-19959012,19960131-19960175,
19960252-19960370,19960450-19960543,19961824-19961985,
19962117-19962266,19962472-19962537,19962934-19962981,
19963654-19963866,19963953-19964078,19964155-19964232,
19964600-19964671,19965522-19965953,19966863-19966925,
19967497-19967898
Length = 760
Score = 26.6 bits (56), Expect = 8.2
Identities = 12/25 (48%), Positives = 14/25 (56%)
Frame = +3
Query: 219 LKCSCGMNPSRTVIGLRSACPMEMR 293
L C G NPSR +GL +A P R
Sbjct: 20 LPCLQGSNPSRPSLGLTNALPWRRR 44
>03_05_0407 -
23906388-23906966,23907028-23907915,23908141-23908753,
23908858-23909021
Length = 747
Score = 26.6 bits (56), Expect = 8.2
Identities = 14/39 (35%), Positives = 22/39 (56%)
Frame = +2
Query: 263 PKIRLPNGDEMPVRQNNFVPVTSENLKLKMLLDDVEQMI 379
PK R+P V ++N VP+T + L + +D+E MI
Sbjct: 18 PKSRIPKLGGSEVHESNIVPITVDKLTPEQ-KNDLEAMI 55
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,715,337
Number of Sequences: 37544
Number of extensions: 179824
Number of successful extensions: 393
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 388
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 778540620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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