Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E08
         (658 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC14F5.05c |sam1||S-adenosylmethionine synthetase |Schizosacch...    31   0.15 
SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr...    27   3.1  
SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual         26   5.5  
SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces...    25   9.6  
SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|c...    25   9.6  

>SPBC14F5.05c |sam1||S-adenosylmethionine synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 382

 Score = 31.1 bits (67), Expect = 0.15
 Identities = 11/20 (55%), Positives = 14/20 (70%)
 Frame = +1

Query: 7   TSTYGHFGREGFPWESPKPL 66
           T++YGHF  +  PWE PK L
Sbjct: 361 TASYGHFTDQSKPWEQPKEL 380


>SPAC1687.10 |mcp1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 661

 Score = 26.6 bits (56), Expect = 3.1
 Identities = 14/62 (22%), Positives = 31/62 (50%)
 Frame = +2

Query: 35  KGSRGRAPSPSL*NDFRPEALCKYYTSIYYKLLIYYVCHCRKDAKLSRAFVSLDELMFVS 214
           K   G+ P+  L  ++  + L  +   +     +Y+V +  +   L + ++SL  +MFVS
Sbjct: 226 KNMCGKNPTSELPTNYSDKTLTLWENELSSMRKVYFVKYKTEYEFLQKRYLSLARIMFVS 285

Query: 215 RE 220
           ++
Sbjct: 286 KK 287


>SPAC4A8.10 |||lipase |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 723

 Score = 25.8 bits (54), Expect = 5.5
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 200 IHLKRQTPATIWRPSYNDTRSR 135
           +H++ QTP  +WR  Y+   S+
Sbjct: 220 LHVEHQTPENLWRLPYSSFHSK 241


>SPBC24C6.10c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 374

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 13/37 (35%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = +2

Query: 107 YTSIYYKL-LIYYVCHCRKDAKLSRAFVSLDELMFVS 214
           +TS  Y L L+YY+C  R+ +      V++DE   V+
Sbjct: 141 FTSFRYALFLVYYICRSRRLSPTD--LVAIDEYFLVN 175


>SPAC186.05c |||human TMEM165 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 262

 Score = 25.0 bits (52), Expect = 9.6
 Identities = 16/51 (31%), Positives = 22/51 (43%)
 Frame = +2

Query: 167 KLSRAFVSLDELMFVSREPREWNCGTAVRKPLPQVTVALTGFNIIIIKCSL 319
           K SRAF+    L+FVS         T V     +V     G NI  + C++
Sbjct: 174 KFSRAFIKAFALIFVSELGDRSQIATIVMSAKEKVLDVFIGVNIGHMLCTM 224


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,775,888
Number of Sequences: 5004
Number of extensions: 57342
Number of successful extensions: 116
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 114
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 116
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 297805304
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)