Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E08
         (658 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_03_0090 - 12347165-12348349                                         34   0.11 
01_02_0051 - 10655867-10657057                                         33   0.15 
05_01_0264 + 2030080-2031270                                           32   0.35 

>01_03_0090 - 12347165-12348349
          Length = 394

 Score = 33.9 bits (74), Expect = 0.11
 Identities = 16/26 (61%), Positives = 17/26 (65%), Gaps = 2/26 (7%)
 Frame = +1

Query: 4   KTSTYGHFGRE--GFPWESPKPLIVE 75
           KT+ YGHFGRE   F WE  KPL  E
Sbjct: 365 KTAAYGHFGREDPDFTWEVVKPLKYE 390


>01_02_0051 - 10655867-10657057
          Length = 396

 Score = 33.5 bits (73), Expect = 0.15
 Identities = 15/23 (65%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 4   KTSTYGHFGRE--GFPWESPKPL 66
           KT+ YGHFGRE   F WE  KPL
Sbjct: 367 KTAAYGHFGREDPDFTWEVVKPL 389


>05_01_0264 + 2030080-2031270
          Length = 396

 Score = 32.3 bits (70), Expect = 0.35
 Identities = 14/23 (60%), Positives = 16/23 (69%), Gaps = 2/23 (8%)
 Frame = +1

Query: 4   KTSTYGHFGRE--GFPWESPKPL 66
           KT+ YGHFGR+   F WE  KPL
Sbjct: 367 KTAAYGHFGRDDPDFTWEVVKPL 389


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,012,620
Number of Sequences: 37544
Number of extensions: 325979
Number of successful extensions: 599
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 594
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 599
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1644004708
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)