Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E07
         (699 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

12_02_0067 + 13144002-13144203,13144471-13144529,13144638-131447...    31   0.88 
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503...    30   2.0  
01_07_0258 - 42350630-42350716,42351031-42351081,42351166-423511...    29   2.7  
06_01_0604 - 4358278-4358442,4358835-4358943,4359236-4359331,435...    28   8.2  

>12_02_0067 +
           13144002-13144203,13144471-13144529,13144638-13144713,
           13144802-13144873,13144969-13145056,13145365-13145601,
           13145705-13145910,13145946-13146122,13146220-13146251,
           13146330-13146432,13146547-13146815,13148029-13148175,
           13148272-13148412,13148509-13148595,13148841-13148931,
           13149093-13149192,13149292-13149352,13149442-13149663,
           13149756-13149872,13149972-13150061,13150168-13150344
          Length = 917

 Score = 31.1 bits (67), Expect = 0.88
 Identities = 16/72 (22%), Positives = 38/72 (52%), Gaps = 1/72 (1%)
 Frame = +3

Query: 342 MFSLLHQRLPEYKEEELALPDVAIQKVEVDKLVTYYEYTYVNISASVHMNEVQSQLVYDK 521
           M + + +RLP +  E+  +   +   + ++   TYY   +VN ++  ++N+   ++ Y++
Sbjct: 316 MQNAVKERLPNFTREQSEMIKGSADYIAINHYTTYYVSHHVNKTSISYLNDWDVKISYER 375

Query: 522 ESVLV-QQARLN 554
             V + +QA  N
Sbjct: 376 NGVPIGKQAYSN 387


>03_05_0167 - 21448714-21448846,21449748-21449870,21450024-21450302,
            21450389-21450672,21450737-21450964,21452937-21453110,
            21453198-21453732,21453779-21453840,21453908-21454231,
            21454664-21455093,21457033-21457268,21457355-21457414,
            21457495-21457628,21457884-21458010,21458239-21458337,
            21458414-21458513,21458601-21458671,21459101-21459172,
            21459656-21459787,21460512-21460670
          Length = 1253

 Score = 29.9 bits (64), Expect = 2.0
 Identities = 30/122 (24%), Positives = 52/122 (42%), Gaps = 2/122 (1%)
 Frame = +3

Query: 90   PIHTPEGIDILGRLIEAGVASPNVQYYKDFISSWKYVLGNSLWRQHNYNNPSSATPLLVP 269
            P+ T + + I G ++E    +   +  +D +S  K   G  L  Q  +N  SS     V 
Sbjct: 968  PVDTLKHVGISGPMVE----NIEARLKEDILSEVKQQGGRLLLHQEEFN--SSTGQSSVV 1021

Query: 270  SALEHYQT--ALTDPAFYMIWKRVLKMFSLLHQRLPEYKEEELALPDVAIQKVEVDKLVT 443
               EH  T   +T    Y + +   + + + ++R+P  +E E    DV   +  VD+   
Sbjct: 1022 GFWEHIGTEDVMTPAEVYSVLRN--QGYCIDYKRIPLTREREALASDVDAIQSSVDENAR 1079

Query: 444  YY 449
            YY
Sbjct: 1080 YY 1081


>01_07_0258 -
           42350630-42350716,42351031-42351081,42351166-42351198,
           42351338-42351430,42351547-42351639,42351717-42351812,
           42351911-42351967,42352047-42352148,42352317-42352502,
           42352650-42352916
          Length = 354

 Score = 29.5 bits (63), Expect = 2.7
 Identities = 25/83 (30%), Positives = 40/83 (48%), Gaps = 1/83 (1%)
 Frame = +3

Query: 303 DPAFYMIWKRVLKMFSLLHQRLPE-YKEEELALPDVAIQKVEVDKLVTYYEYTYVNISAS 479
           D  ++ +WKRV K        L E Y+E+   L +V I K E+D +   Y+     I  +
Sbjct: 253 DGVYFEVWKRVAKQKMEFTDALSELYREDMFPLRNVDI-KDELDNI--RYDIYVACIDET 309

Query: 480 VHMNEVQSQLVYDKESVLVQQAR 548
           V  NE + QL+ +    +V + R
Sbjct: 310 VPENEAR-QLIKEAVIKMVHRTR 331


>06_01_0604 -
           4358278-4358442,4358835-4358943,4359236-4359331,
           4359823-4359956,4360639-4360905,4361225-4361310,
           4361409-4361501,4361601-4361696,4361986-4362093,
           4362473-4362493,4363856-4364156
          Length = 491

 Score = 27.9 bits (59), Expect = 8.2
 Identities = 15/42 (35%), Positives = 21/42 (50%), Gaps = 1/42 (2%)
 Frame = +3

Query: 54  NGYIINSTGDHVPIHTPEGIDILGRLIEAGVASPNVQ-YYKD 176
           N   +   G  VP+H P+   IL +   AG   P+VQ +Y D
Sbjct: 449 NFVTVRGAGHEVPLHRPKQALILIKSFLAGSPMPSVQDFYSD 490


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,839,374
Number of Sequences: 37544
Number of extensions: 333747
Number of successful extensions: 818
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 795
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 817
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1792053856
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)