Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_E06
(697 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_01_0106 + 788967-789555,790139-790162,790339-791411 31 1.2
03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330 28 1.2
09_06_0289 - 22053561-22055666,22055745-22055771 29 3.5
03_05_0325 + 23135816-23135894,23136161-23136333,23136440-231366... 29 4.7
11_04_0094 + 13418604-13418680,13419331-13419400,13420078-134202... 28 6.2
05_01_0121 - 833885-833949,834180-834430,834545-834604,834893-83... 28 6.2
04_01_0332 + 4378111-4378329,4378862-4378997,4379113-4379165,437... 28 6.2
>01_01_0106 + 788967-789555,790139-790162,790339-791411
Length = 561
Score = 30.7 bits (66), Expect = 1.2
Identities = 21/68 (30%), Positives = 34/68 (50%), Gaps = 2/68 (2%)
Frame = +2
Query: 191 PRLNHKPFSVTIDVKSDIATDA--VIKIFLGPKYNDXGFPITLEENWHKFYELDWFTHKI 364
P L + F V I KSD+ + V+++ G + D G +N H+ Y L+W K+
Sbjct: 437 PELYSRNFGV-ISYKSDVYSFGMLVLEMVSGRRNLDPGI-----DNQHEVYFLEWIYEKV 490
Query: 365 TPGQNKIV 388
GQN ++
Sbjct: 491 FTGQNLLI 498
>03_05_0836 - 28088832-28089422,28089626-28089831,28089985-28090330
Length = 380
Score = 27.9 bits (59), Expect(2) = 1.2
Identities = 11/34 (32%), Positives = 21/34 (61%)
Frame = -1
Query: 259 NGISGNIGLNVDGNTERLVVESWLTNLEVVWVTS 158
NG + + G T+R+++ SWL+ LE+ + T+
Sbjct: 224 NGFTEAPETSNSGQTKRVLLSSWLSTLELAYTTA 257
Score = 21.4 bits (43), Expect(2) = 1.2
Identities = 10/31 (32%), Positives = 18/31 (58%)
Frame = -1
Query: 127 VSGIKLAIVKECD*FLNDNIIDFNADEMKFL 35
VSG ++A+ + L+ N++ + DEM L
Sbjct: 298 VSGTRIALGDDGSIALSRNVVVLHVDEMLLL 328
>09_06_0289 - 22053561-22055666,22055745-22055771
Length = 710
Score = 29.1 bits (62), Expect = 3.5
Identities = 11/31 (35%), Positives = 19/31 (61%)
Frame = -1
Query: 667 VRWTVEWIAKRLVINNKGLKWCQIMATRFKR 575
VRW EW + LV+ + GL+W ++A ++
Sbjct: 40 VRWWDEWQLRILVLGSLGLQWFLLVAAPMRK 70
>03_05_0325 +
23135816-23135894,23136161-23136333,23136440-23136613,
23136881-23137004,23137090-23137190,23137337-23137423,
23137801-23137896,23138209-23138329,23138475-23138603,
23139458-23139549,23139660-23139771,23140189-23140541,
23140670-23140899,23141179-23141278,23143357-23143411,
23143548-23145496,23145587-23145745,23146514-23146685,
23146758-23147056,23147246-23147521
Length = 1626
Score = 28.7 bits (61), Expect = 4.7
Identities = 22/61 (36%), Positives = 28/61 (45%), Gaps = 1/61 (1%)
Frame = -2
Query: 516 NLFGMHSKPSDIYNGTFPSSNNFM-RSVNGKESSLKSENSFELRTILFCPGVILCVNQSS 340
NLF + SD YN SSN M V GKE S +S T+ F G + N ++
Sbjct: 507 NLFVPEGRSSDNYNNDAASSNPLMCDGVGGKELDDDSSSSKGTHTVKF-DGQLTSSNATT 565
Query: 339 S 337
S
Sbjct: 566 S 566
>11_04_0094 +
13418604-13418680,13419331-13419400,13420078-13420236,
13420334-13420445,13420530-13420649,13422249-13422406,
13422987-13423217,13424621-13424713,13425088-13425227,
13426331-13426401,13427554-13427637,13427752-13427846
Length = 469
Score = 28.3 bits (60), Expect = 6.2
Identities = 17/47 (36%), Positives = 24/47 (51%), Gaps = 1/47 (2%)
Frame = -2
Query: 615 ASNGVRSWLLDSNGYTKTKNW-NGYPPSVPLGNINLFGMHSKPSDIY 478
+S+ SW L + K KNW NG ++ +G FG S P DI+
Sbjct: 35 SSSQFYSWCLQTKTQVKVKNWVNGTEGTIVVGLSARFGA-SVPRDIH 80
>05_01_0121 -
833885-833949,834180-834430,834545-834604,834893-834926,
835746-835805,836409-836509,836939-837039,837209-837289,
837580-837650,837738-837849,838138-838173,838865-838951,
839055-839396
Length = 466
Score = 28.3 bits (60), Expect = 6.2
Identities = 13/34 (38%), Positives = 19/34 (55%)
Frame = +2
Query: 404 FSLFKEDSLPLTDLMKLLDEGKVPLYMSEGFECM 505
F+ FKE+ PLT + L G P + +GF C+
Sbjct: 346 FNSFKENLNPLTVVHNWLGPGVCPKVVEKGFRCI 379
>04_01_0332 +
4378111-4378329,4378862-4378997,4379113-4379165,
4379286-4379394,4379467-4379603,4379698-4379894,
4379979-4380128,4380233-4380293,4380380-4380500,
4380901-4380991,4381116-4381209,4381446-4381541,
4382176-4382316,4382592-4382642,4383093-4383161,
4384072-4384142,4384244-4384336,4384820-4384910,
4386164-4386235,4387226-4387351,4387537-4387593,
4387926-4388000,4388570-4388658,4388814-4388891,
4389308-4389446,4389868-4389977,4390151-4390250,
4390548-4390655
Length = 977
Score = 28.3 bits (60), Expect = 6.2
Identities = 14/54 (25%), Positives = 28/54 (51%), Gaps = 5/54 (9%)
Frame = -2
Query: 615 ASNGVRSWLLDSNGYT-KTKNWNGYPPSVP----LGNINLFGMHSKPSDIYNGT 469
++NG R+WL+D N T K +W+ P +I+++ +H + ++ T
Sbjct: 286 SANGTRTWLVDINSETLKPASWDELSDEKPNLESFSDISIYELHIRDFSAHDST 339
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,305,799
Number of Sequences: 37544
Number of extensions: 345783
Number of successful extensions: 888
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 855
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 888
length of database: 14,793,348
effective HSP length: 80
effective length of database: 11,789,828
effective search space used: 1780264028
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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