Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E02
         (452 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_04_0347 + 22193708-22193720,22194317-22194390,22195388-221961...    28   3.1  
03_06_0489 - 34284301-34284336,34285104-34285227,34285307-342853...    28   4.0  
09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,388...    27   7.1  

>02_04_0347 +
           22193708-22193720,22194317-22194390,22195388-22196132,
           22196203-22196417,22196505-22196786,22196870-22196998,
           22197088-22197267,22197538-22197645,22197888-22198094
          Length = 650

 Score = 28.3 bits (60), Expect = 3.1
 Identities = 10/42 (23%), Positives = 23/42 (54%)
 Frame = -1

Query: 260 ITERSPINIIAANIPYMIIAHIIIKTSILSYTTEQILHIKTL 135
           +T+R  I ++    P +I+ H+I+ + +   +  Q++H   L
Sbjct: 32  VTKRLGITVLIVLFPLLIVHHLIVNSPVSGPSRYQVIHSNLL 73


>03_06_0489 -
           34284301-34284336,34285104-34285227,34285307-34285371,
           34285472-34285555,34285661-34285789,34285887-34285976,
           34286116-34286250,34286939-34286984,34287119-34287225,
           34287355-34287412,34287524-34287765
          Length = 371

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 11/31 (35%), Positives = 21/31 (67%)
 Frame = +3

Query: 342 DPKSKSELKFTSIDEVHTVDLTIVVPAYNEE 434
           DP S ++++  SI +     +++++PAYNEE
Sbjct: 94  DPNSLNKVRCPSIYDPAEKYISLIIPAYNEE 124


>09_02_0071 - 3877231-3877807,3880716-3880722,3880723-3881000,
            3881287-3883916
          Length = 1163

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 28/90 (31%), Positives = 45/90 (50%), Gaps = 2/90 (2%)
 Frame = -1

Query: 278  SVIIYKITER-SPINIIAANIPYMIIAHIIIKTSILSYTTEQILHIKTLRVIQLSYFKVI 102
            S  IY+ T   SP   I +   +M I+  +  +S  S+T   +L + T+R++   Y++  
Sbjct: 892  SYSIYRETTTISPAAEITSFDGHMPIS--LFTSSYKSFTFASLLEMVTMRLL---YYRAP 946

Query: 101  IIL*TKNSKRILYLLYSN-YIHTQNNITPT 15
            +IL   NS  +  L Y N Y  T N  TP+
Sbjct: 947  LILLVFNSSILFPLPYMNLYFVTGNWPTPS 976


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,738,989
Number of Sequences: 37544
Number of extensions: 147338
Number of successful extensions: 260
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 259
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 260
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 883560296
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)