Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E01
         (586 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual      29   0.38 
SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces ...    27   1.5  
SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|ch...    26   4.7  
SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation...    25   6.2  
SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces pomb...    25   6.2  

>SPAC17H9.01 |cid16||poly|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1202

 Score = 29.5 bits (63), Expect = 0.38
 Identities = 17/52 (32%), Positives = 29/52 (55%)
 Frame = +3

Query: 3   KSIASIYKLDTGKNNILRSSLEMHGVLEQRPWTKNILEKGFDTTGTGLKSIE 158
           KS+ SI      K+N L++S E+  ++E+  + KN++   F     G+KS E
Sbjct: 756 KSLESIGLTSFVKDNKLKASKELQKLIEENVFPKNLILFIFRKCVIGIKSFE 807


>SPAC1486.03c |||RNA-binding splicing factor|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 797

 Score = 27.5 bits (58), Expect = 1.5
 Identities = 13/28 (46%), Positives = 16/28 (57%)
 Frame = +3

Query: 102 KNILEKGFDTTGTGLKSIESWWYKSRLG 185
           KNI +  F+TTG G K +E   YK   G
Sbjct: 106 KNIPKMKFNTTGFGAKMLEKMGYKQGQG 133


>SPCC1322.03 |||TRP-like ion channel|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 862

 Score = 25.8 bits (54), Expect = 4.7
 Identities = 13/35 (37%), Positives = 19/35 (54%)
 Frame = -3

Query: 164 PTLDALETCSSCVETFFQYVFSPRSLFENAVHLER 60
           P+LD  ETCS+ V       FSP ++ +N   + R
Sbjct: 27  PSLDYFETCSNFVPRAGIPTFSPYAVIKNFDEVNR 61


>SPAC1071.01c |pta1|SPAC4H3.15c|mRNA cleavage and polyadenylation
           specificity factor complex subunit
           Pta1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 670

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 26/109 (23%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
 Frame = -3

Query: 323 TSVSRLHSRHIN*WSNHTGLDGSHDDAHLERQTAEGSER*QKPVRKAKATLIPPTL---D 153
           +SV ++H+ +++    HT +D S      E   +  S+R +    ++    + P L   D
Sbjct: 281 SSVEKIHA-YLSGQIYHTKVDESLKKRQYEGNISAASKRVKSSAVQSLVERMQPQLSSHD 339

Query: 152 ALETCSSCVETFF-QYVFSPRSLFENAVHLERAAEDVVLTSVEFIDRSY 9
            L+  +  +  F  Q   +P + F+        A ++VLTS+  ID++Y
Sbjct: 340 GLQN-NPLISIFASQTAINPLANFDVTSIPVEVATEIVLTSLLKIDKNY 387


>SPBC17A3.04c |||methionine-tRNA ligase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 782

 Score = 25.4 bits (53), Expect = 6.2
 Identities = 17/50 (34%), Positives = 28/50 (56%), Gaps = 3/50 (6%)
 Frame = -1

Query: 376 SLSKG-NPRGIVSK-HTLHRQAYLAFIVDISIDGQ-TIPVLTGVTMTHIW 236
           +L +G +P+ +  K H LH++ Y  F +D    G+ T P  TG+   HI+
Sbjct: 280 ALEEGVSPKELCDKYHALHKEVYDWFEIDFDHFGRTTTPKQTGIAQ-HIF 328


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,446,148
Number of Sequences: 5004
Number of extensions: 51715
Number of successful extensions: 150
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 150
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 252150250
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)