Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E01
         (586 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203     29   2.7  
10_07_0193 - 13954819-13954950,13955340-13955375                       29   3.6  
06_03_1488 + 30484904-30485134,30485239-30487159,30487255-304876...    29   3.6  
01_06_0905 + 32880368-32880633,32882439-32882568,32882704-328828...    28   4.8  
09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078     28   6.3  
05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664     27   8.3  
01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547           27   8.3  

>04_04_0942 - 29551856-29552344,29552569-29552934,29553985-29554203
          Length = 357

 Score = 29.1 bits (62), Expect = 2.7
 Identities = 14/32 (43%), Positives = 20/32 (62%), Gaps = 2/32 (6%)
 Frame = +3

Query: 102 KNILEKGFDTTGTGLKSIE--SWWYKSRLGFP 191
           +NI   GF+   +  +SIE  S+WY SRL +P
Sbjct: 230 RNIANGGFNYVKSNERSIEFYSFWYSSRLRYP 261


>10_07_0193 - 13954819-13954950,13955340-13955375
          Length = 55

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 11/23 (47%), Positives = 14/23 (60%)
 Frame = -1

Query: 232 GKPPRVPRGNRSLCGKPRRLLYH 164
           G+ PR+PR    LC  P R +YH
Sbjct: 19  GRLPRLPRHQEFLCFHPHRRVYH 41


>06_03_1488 +
           30484904-30485134,30485239-30487159,30487255-30487691,
           30487777-30487983
          Length = 931

 Score = 28.7 bits (61), Expect = 3.6
 Identities = 16/43 (37%), Positives = 23/43 (53%)
 Frame = +2

Query: 29  RHW*EQHPPQLARDARRSRTETVD*KHIGKRFRHNWNRSQEHR 157
           R W    P Q+ARD  +   ETV  + +GKR    ++RS+  R
Sbjct: 399 RSWGTTDPKQIARDIAKQIRETVRRQDLGKRL---YSRSESFR 438


>01_06_0905 +
           32880368-32880633,32882439-32882568,32882704-32882894,
           32883625-32883852,32884062-32884224,32884343-32884416,
           32884484-32884601,32884722-32884788,32885152-32885223,
           32885350-32885513
          Length = 490

 Score = 28.3 bits (60), Expect = 4.8
 Identities = 10/32 (31%), Positives = 18/32 (56%)
 Frame = -1

Query: 313 LAFIVDISIDGQTIPVLTGVTMTHIWRGKPPR 218
           +A +VD  ++G   P + G+  T +  G PP+
Sbjct: 71  VAGVVDFPVEGSANPFMVGLYFTRVKLGSPPK 102


>09_04_0672 + 19367940-19368203,19368307-19368399,19368711-19370078
          Length = 574

 Score = 27.9 bits (59), Expect = 6.3
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 358 PRGIVSKHTLHRQAYLAFIVDISIDGQTIPVLTGVTMTHIW 236
           P  +  +H  +R A L  +VD+ +    IP   G + TH W
Sbjct: 431 PASLAVRHAAYRLA-LGSVVDVVLQNTAIPPPNGRSETHPW 470


>05_03_0466 - 14362190-14362312,14362411-14362658,14363289-14363664
          Length = 248

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 21/76 (27%), Positives = 35/76 (46%), Gaps = 5/76 (6%)
 Frame = -3

Query: 503 FLHYHIGHVHIFDGVRHSR*VLSVYLQVGKLHVVCEESRH-----INFPIEGESQGHCVE 339
           FL +H+  + +F GV     +++   Q+G  H++    R      +  P+    Q  C  
Sbjct: 116 FLPFHVSAMRVFRGVYS---IIAHGFQIGLAHLIVRPQRRAAARLLLLPLVAARQ--CRS 170

Query: 338 TYTPPTSVSRLHSRHI 291
              PP+S SR HSR +
Sbjct: 171 P--PPSSSSRRHSRRL 184


>01_01_0569 - 4214513-4214669,4215082-4216031,4216488-4216547
          Length = 388

 Score = 27.5 bits (58), Expect = 8.3
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = -3

Query: 434 VYLQVGKLHVVCEESRHINFPIEGESQGHCVETYTPPTSVSRLH 303
           +Y+  G+        R    PIE E++ +     +PP+S S LH
Sbjct: 333 IYIYRGEKAFCSANCRDQQIPIEEEAENNTTIVSSPPSSCSSLH 376


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 16,084,481
Number of Sequences: 37544
Number of extensions: 348594
Number of successful extensions: 867
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 848
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 867
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1376330256
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)