Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_E01
         (586 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical pr...    33   0.15 
AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical ...    32   0.34 
Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical pr...    28   4.2  
Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical p...    28   5.6  
Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical pr...    28   5.6  
Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical pr...    28   5.6  
AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP ...    28   5.6  
U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical ...    27   9.8  
AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical ...    27   9.8  

>Z81502-2|CAB04106.2|  720|Caenorhabditis elegans Hypothetical
           protein F14B6.2 protein.
          Length = 720

 Score = 33.1 bits (72), Expect = 0.15
 Identities = 31/105 (29%), Positives = 45/105 (42%), Gaps = 5/105 (4%)
 Frame = -3

Query: 362 ESQGHCVETYTPPTSVSRLHSRHIN*WSNHTGLDGSHDDAHLERQTAEGSER*QKPVRKA 183
           E +    E YTPP S+S L   H    S+H+G   +    H E  ++        P    
Sbjct: 479 EKKKEAFEAYTPPISLSDLQPSH----SSHSGPAQAPQHIHFESASS-------TPSTPP 527

Query: 182 KATLIPPTLDA---LETCSSCVETFFQYVFSP--RSLFENAVHLE 63
               IPP+ +A   +E   +  ET +    +P  R +FEN  HLE
Sbjct: 528 AFHFIPPSSEAPYYVEINDADTETVYVSSVTPMYRPVFENMGHLE 572


>AF039043-1|AAB94194.1| 5105|Caenorhabditis elegans Hypothetical
            protein F39C12.1 protein.
          Length = 5105

 Score = 31.9 bits (69), Expect = 0.34
 Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 2/68 (2%)
 Frame = -1

Query: 229  KPPR--VPRGNRSLCGKPRRLLYHQLSMLLRPVPVVSKPFSNMFLVHGLCSRTPCISSEL 56
            KPP+  VP+G ++     +R  Y +L    +P P    P S      G+ + TP I    
Sbjct: 3405 KPPQLEVPQGVQTYNPPSQRKYYTRLGREWKPPPKAKTPLSIRVPQSGVSTSTPAIDLSA 3464

Query: 55   RRMLFLPV 32
            + +L  P+
Sbjct: 3465 KEVLLAPI 3472


>Z78418-2|CAB01695.1|  817|Caenorhabditis elegans Hypothetical
           protein F25D7.3 protein.
          Length = 817

 Score = 28.3 bits (60), Expect = 4.2
 Identities = 17/36 (47%), Positives = 21/36 (58%)
 Frame = +2

Query: 344 HNAPGIPLR*GNLYAYFLHKQHEVYRLASIQKGLID 451
           +N PGIP+R GN YA  L    E  R  S+Q  L+D
Sbjct: 350 NNFPGIPVRLGNFYASPLVDFKEFMR-KSLQLKLVD 384


>Z83117-6|CAN86902.1| 1931|Caenorhabditis elegans Hypothetical protein
            T01H8.5d protein.
          Length = 1931

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = +2

Query: 80   SRTETVD*KHIGKRFRHNWNRSQEHRELVV*ESPWLSAQASVTSRNPRRFASPDVRHRDS 259
            S T+++  +H  +R R+N + S EH E  V +S       +VTS +PR+ ++ D+R   S
Sbjct: 1743 SITDSIAIRHPERRIRNNRSNSSEHDESAV-DS---EGGGNVTS-SPRKRSTRDLRMTPS 1797

Query: 260  RQ 265
             Q
Sbjct: 1798 SQ 1799


>Z83117-5|CAN86901.1| 1971|Caenorhabditis elegans Hypothetical protein
            T01H8.5c protein.
          Length = 1971

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = +2

Query: 80   SRTETVD*KHIGKRFRHNWNRSQEHRELVV*ESPWLSAQASVTSRNPRRFASPDVRHRDS 259
            S T+++  +H  +R R+N + S EH E  V +S       +VTS +PR+ ++ D+R   S
Sbjct: 1783 SITDSIAIRHPERRIRNNRSNSSEHDESAV-DS---EGGGNVTS-SPRKRSTRDLRMTPS 1837

Query: 260  RQ 265
             Q
Sbjct: 1838 SQ 1839


>Z83117-4|CAB05572.2| 2032|Caenorhabditis elegans Hypothetical protein
            T01H8.5a protein.
          Length = 2032

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = +2

Query: 80   SRTETVD*KHIGKRFRHNWNRSQEHRELVV*ESPWLSAQASVTSRNPRRFASPDVRHRDS 259
            S T+++  +H  +R R+N + S EH E  V +S       +VTS +PR+ ++ D+R   S
Sbjct: 1844 SITDSIAIRHPERRIRNNRSNSSEHDESAV-DS---EGGGNVTS-SPRKRSTRDLRMTPS 1898

Query: 260  RQ 265
             Q
Sbjct: 1899 SQ 1900


>Z80219-10|CAN86596.1| 1931|Caenorhabditis elegans Hypothetical
            protein T01H8.5d protein.
          Length = 1931

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = +2

Query: 80   SRTETVD*KHIGKRFRHNWNRSQEHRELVV*ESPWLSAQASVTSRNPRRFASPDVRHRDS 259
            S T+++  +H  +R R+N + S EH E  V +S       +VTS +PR+ ++ D+R   S
Sbjct: 1743 SITDSIAIRHPERRIRNNRSNSSEHDESAV-DS---EGGGNVTS-SPRKRSTRDLRMTPS 1797

Query: 260  RQ 265
             Q
Sbjct: 1798 SQ 1799


>Z80219-9|CAN86595.1| 1971|Caenorhabditis elegans Hypothetical protein
            T01H8.5c protein.
          Length = 1971

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = +2

Query: 80   SRTETVD*KHIGKRFRHNWNRSQEHRELVV*ESPWLSAQASVTSRNPRRFASPDVRHRDS 259
            S T+++  +H  +R R+N + S EH E  V +S       +VTS +PR+ ++ D+R   S
Sbjct: 1783 SITDSIAIRHPERRIRNNRSNSSEHDESAV-DS---EGGGNVTS-SPRKRSTRDLRMTPS 1837

Query: 260  RQ 265
             Q
Sbjct: 1838 SQ 1839


>Z80219-8|CAB02303.2| 2032|Caenorhabditis elegans Hypothetical protein
            T01H8.5a protein.
          Length = 2032

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = +2

Query: 80   SRTETVD*KHIGKRFRHNWNRSQEHRELVV*ESPWLSAQASVTSRNPRRFASPDVRHRDS 259
            S T+++  +H  +R R+N + S EH E  V +S       +VTS +PR+ ++ D+R   S
Sbjct: 1844 SITDSIAIRHPERRIRNNRSNSSEHDESAV-DS---EGGGNVTS-SPRKRSTRDLRMTPS 1898

Query: 260  RQ 265
             Q
Sbjct: 1899 SQ 1900


>AJ276020-1|CAC81668.1| 1971|Caenorhabditis elegans putative TRP
            homologous cationchannel protein.
          Length = 1971

 Score = 27.9 bits (59), Expect = 5.6
 Identities = 21/62 (33%), Positives = 35/62 (56%)
 Frame = +2

Query: 80   SRTETVD*KHIGKRFRHNWNRSQEHRELVV*ESPWLSAQASVTSRNPRRFASPDVRHRDS 259
            S T+++  +H  +R R+N + S EH E  V +S       +VTS +PR+ ++ D+R   S
Sbjct: 1783 SITDSIAIRHPERRIRNNRSNSSEHDESAV-DS---EGGGNVTS-SPRKRSTRDLRMTPS 1837

Query: 260  RQ 265
             Q
Sbjct: 1838 SQ 1839


>U42834-4|AAA83584.1| 2229|Caenorhabditis elegans Hypothetical protein
            F28B4.3 protein.
          Length = 2229

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 17/47 (36%), Positives = 26/47 (55%)
 Frame = +3

Query: 3    KSIASIYKLDTGKNNILRSSLEMHGVLEQRPWTKNILEKGFDTTGTG 143
            +S+ASI  LD     ILR  ++M    + R W +N +  GF++T  G
Sbjct: 925  QSLASIVMLDNNFQEILRD-VQM----QDRGWIRNFVLVGFNSTWGG 966


>AL161712-2|CAC70128.1|  313|Caenorhabditis elegans Hypothetical
           protein Y66D12A.3 protein.
          Length = 313

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 27/93 (29%), Positives = 46/93 (49%), Gaps = 3/93 (3%)
 Frame = +1

Query: 43  TTSSAARSRCTAFSNRDRGLK---TYWKKVSTQLEQVSRASRVGGIRVALAFRTGFCYLS 213
           T  +    R T+F NR   L+   T+ + ++T    +++     G+RVA  ++    + +
Sbjct: 138 TNYTVPYERSTSFLNRFTILEHGQTWDQFIATSYSGLAKIRLKNGVRVAFTYKMYAQFQN 197

Query: 214 EPSAVCLSRCASS*LPSRPVWFDHQLICLL*RR 312
           EP  + + R ASS    R + F H L CLL R+
Sbjct: 198 EPVDIII-RSASS--FQREIDF-HFLNCLLTRK 226


>AF016682-9|AAB66189.3|  441|Caenorhabditis elegans Hypothetical
           protein T07D3.9a protein.
          Length = 441

 Score = 27.1 bits (57), Expect = 9.8
 Identities = 23/80 (28%), Positives = 36/80 (45%)
 Frame = -1

Query: 550 YDQFIDMSESKYVRSSFFITISDMSISLMVLDIVDKSFLYTCKSVNFMLFVKKVGI*ISL 371
           +D F+  ++ KYV+     TISD    L  L  ++   L     VN  +F   +    S+
Sbjct: 351 FDSFVTYTDGKYVQVKVAATISDQH-KLPELAKLNHPTLGEEARVNTNVFNFTME---SV 406

Query: 370 SKGNPRGIVSKHTLHRQAYL 311
              N   +V KH +H  +YL
Sbjct: 407 ENPNVLRVVPKHYVHTTSYL 426


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,628,100
Number of Sequences: 27780
Number of extensions: 295797
Number of successful extensions: 820
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 763
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 820
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1226509528
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)