Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D24
         (489 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces pom...    27   1.5  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    27   2.0  
SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|c...    26   3.5  
SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces...    26   3.5  
SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual    25   6.1  
SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein Usp104|Schi...    25   6.1  
SPBC30D10.04 |swi3||replication fork protection complex subunit ...    25   8.1  

>SPAC18G6.01c |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 259

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 281 SKRLRLSKIQRT-PVNRINIKSCSIYY*VYTND*LYSYK 394
           +++  +SK + T PVNR   K  +++  +Y ND  Y YK
Sbjct: 170 AEQAAVSKFRSTFPVNRTCFKETALWMKLYGNDFCYIYK 208


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 16/50 (32%), Positives = 23/50 (46%)
 Frame = -3

Query: 202 VVYSRRHFPYPHWSQIXA*SHAHSTYTENAQNRYLLRTIPFLLRPDHPFV 53
           ++Y R  FP   + Q    S   S Y  NA + YL + +P +     PFV
Sbjct: 252 ILYGRFVFPIISFFQFNVTSGLSSLYGLNAWHYYLSQALPLICGGFLPFV 301


>SPAC694.02 |||DEAD/DEAH box helicase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 1717

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 15/46 (32%), Positives = 22/46 (47%)
 Frame = -3

Query: 208 SAVVYSRRHFPYPHWSQIXA*SHAHSTYTENAQNRYLLRTIPFLLR 71
           SA VY+R +  YPH  Q     +       N  N  +L T+P +L+
Sbjct: 797 SAEVYARFNKHYPHAGQTVWSVYTRDYRINNPTNCQVLITVPHVLQ 842


>SPBC1734.07c |||TRAPP complex subunit Trs85 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 618

 Score = 25.8 bits (54), Expect = 3.5
 Identities = 14/37 (37%), Positives = 21/37 (56%), Gaps = 1/37 (2%)
 Frame = -2

Query: 263 PVSHLAIMRSFSKRANSRLRGRV*SSPF-SIPALVPN 156
           PV+HL ++ S +      LR  + S P+ S+PA V N
Sbjct: 199 PVAHLVVVTSHNPSPFESLRSLINSIPYLSLPAFVFN 235


>SPAC18B11.05 |gpi18||pig-V|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 426

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 17/57 (29%), Positives = 27/57 (47%), Gaps = 1/57 (1%)
 Frame = -2

Query: 470 SHNILICNFFLICAY*QIKIICLNIFYNCI-INHLYKLSSKCCTILC*FYXPAYVGF 303
           S+ I  C FF + A   +KI    +    + ++ L    +KC  IL  F+   Y+GF
Sbjct: 221 SNGIFWCIFFGMPAIGTLKISLERLQLTFMQVSQLVGYGTKCLIILVPFFYNQYLGF 277


>SPAC4D7.13 |usp104|prp40|U1 snRNP-associated protein
           Usp104|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 695

 Score = 25.0 bits (52), Expect = 6.1
 Identities = 12/39 (30%), Positives = 16/39 (41%)
 Frame = -3

Query: 178 PYPHWSQIXA*SHAHSTYTENAQNRYLLRTIPFLLRPDH 62
           PY  WS   A       YT N+  +YL +    +   DH
Sbjct: 344 PYTRWSVAQAKFDQDPRYTRNSNMKYLSKLDALVAFEDH 382


>SPBC30D10.04 |swi3||replication fork protection complex subunit
           Swi3|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 181

 Score = 24.6 bits (51), Expect = 8.1
 Identities = 10/25 (40%), Positives = 18/25 (72%)
 Frame = +1

Query: 178 ENGDDYTRPRSREFARFEKERMMAK 252
           EN D   +PR R  A+F++ER++++
Sbjct: 37  ENPDSVKKPRKR-LAKFDEERLISE 60


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,097,539
Number of Sequences: 5004
Number of extensions: 44431
Number of successful extensions: 97
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 97
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 97
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 190087364
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)