Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D24
         (489 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical pr...    69   2e-12
U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta p...    69   2e-12
Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical pr...    30   1.0  
L23651-3|AAY44021.1|  136|Caenorhabditis elegans Temporarily ass...    27   7.3  
Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical pr...    27   9.7  
U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical pr...    27   9.7  
AC090999-13|AAP46264.2|  256|Caenorhabditis elegans Hypothetical...    27   9.7  

>Z35604-2|CAA84677.1|  809|Caenorhabditis elegans Hypothetical
           protein ZK1058.2 protein.
          Length = 809

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = +1

Query: 214 EFARFEKERMMAKWDTGENPIYKQATSTFKNPTYAGX*N 330
           E+A F  ER+MAKWDT ENPIYKQAT+TFKNP YAG  N
Sbjct: 771 EYATFNNERLMAKWDTNENPIYKQATTTFKNPVYAGKAN 809



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = +2

Query: 11  EDCLFVYVYSFNEPHE-WVIRAQKERDCPKKVPILGI-LGVRAMCVASCXYLGPMRVWKM 184
           +DC F Y+Y ++E  +   +  +K +DCP  VP+L I LGV A  V     L  + +WK+
Sbjct: 705 DDCTFYYLYYYDEATDNATVWVRKHKDCPPPVPVLAIVLGVIAGIVILGILL--LLLWKL 762

Query: 185 ATTIHDR 205
            T +HDR
Sbjct: 763 LTVLHDR 769


>U19744-1|AAA85704.1|  809|Caenorhabditis elegans integrin beta
           pat-3 protein.
          Length = 809

 Score = 68.9 bits (161), Expect = 2e-12
 Identities = 29/39 (74%), Positives = 32/39 (82%)
 Frame = +1

Query: 214 EFARFEKERMMAKWDTGENPIYKQATSTFKNPTYAGX*N 330
           E+A F  ER+MAKWDT ENPIYKQAT+TFKNP YAG  N
Sbjct: 771 EYATFNNERLMAKWDTNENPIYKQATTTFKNPVYAGKAN 809



 Score = 48.0 bits (109), Expect = 4e-06
 Identities = 26/67 (38%), Positives = 39/67 (58%), Gaps = 2/67 (2%)
 Frame = +2

Query: 11  EDCLFVYVYSFNEPHE-WVIRAQKERDCPKKVPILGI-LGVRAMCVASCXYLGPMRVWKM 184
           +DC F Y+Y ++E  +   +  +K +DCP  VP+L I LGV A  V     L  + +WK+
Sbjct: 705 DDCTFYYLYYYDEATDNATVWVRKHKDCPPPVPVLAIVLGVIAGIVILGILL--LLLWKL 762

Query: 185 ATTIHDR 205
            T +HDR
Sbjct: 763 LTVLHDR 769


>Z81104-2|CAB70254.1|  233|Caenorhabditis elegans Hypothetical
           protein M199.4 protein.
          Length = 233

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = -2

Query: 407 CLNIFYNCIINHLYKLSSKCC 345
           C+N+F+N   N LYK S K C
Sbjct: 87  CINMFWNQATNDLYKTSEKVC 107


>L23651-3|AAY44021.1|  136|Caenorhabditis elegans Temporarily
           assigned gene nameprotein 250, isoform b protein.
          Length = 136

 Score = 27.1 bits (57), Expect = 7.3
 Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
 Frame = +2

Query: 257 TRARIRFISKRL-RLSKIQRTPVNRINIKSCSI 352
           TR  I  +  RL   S  +R P+N +N+++C I
Sbjct: 85  TRGPITILFVRLSNTSSFKRPPINSVNVRACPI 117


>Z81493-8|CAB04043.1|  305|Caenorhabditis elegans Hypothetical
           protein F01D5.8 protein.
          Length = 305

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 14/43 (32%), Positives = 19/43 (44%)
 Frame = -1

Query: 258 VPLGHHAFFFKTRKLPTPRSCIVVAIFHTRIGPKXXHEATHIA 130
           +PL H    ++  K P P   +  A  HT +  K  H  T IA
Sbjct: 230 IPLSHGLALYEKLKNPVPPLIVHGANHHTILSGKYIHVFTRIA 272


>U23450-5|AAK31466.3|  706|Caenorhabditis elegans Hypothetical
           protein C30B5.1 protein.
          Length = 706

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 11/35 (31%), Positives = 19/35 (54%)
 Frame = -3

Query: 277 KSDSRPCPTWPSCVLFQNAQTPDSAVVYSRRHFPY 173
           +++ RP P  P  + +QN +T   ++    RHF Y
Sbjct: 400 ETEERPRPKLPKTI-YQNTRTHSDSLTERSRHFTY 433


>AC090999-13|AAP46264.2|  256|Caenorhabditis elegans Hypothetical
           protein Y82E9BR.21 protein.
          Length = 256

 Score = 26.6 bits (56), Expect = 9.7
 Identities = 9/18 (50%), Positives = 15/18 (83%)
 Frame = -2

Query: 392 YNCIINHLYKLSSKCCTI 339
           ++ I NHL K+SS+CC++
Sbjct: 112 FDVIRNHLGKISSECCSL 129


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,514,358
Number of Sequences: 27780
Number of extensions: 248991
Number of successful extensions: 512
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 485
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 508
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 914086948
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)