Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_D23
(608 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical pr... 31 0.85
AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell death-re... 31 0.85
AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical... 29 2.0
U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily ass... 29 2.6
U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore co... 28 6.0
U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore co... 28 6.0
AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical... 28 6.0
AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical... 28 6.0
AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical... 28 6.0
AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical... 28 6.0
Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical pr... 27 7.9
>Z49909-4|CAA90108.1| 876|Caenorhabditis elegans Hypothetical
protein C14A4.4a protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.85
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +1
Query: 163 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 330
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 331 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKIFLGPKYNDXGF 477
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>AY303577-1|AAP57299.1| 876|Caenorhabditis elegans cell
death-related nuclease 3 protein.
Length = 876
Score = 30.7 bits (66), Expect = 0.85
Identities = 23/109 (21%), Positives = 51/109 (46%), Gaps = 4/109 (3%)
Frame = +1
Query: 163 VGYINAFKHYLK----PYPQEKLHFVGVKINDVVVEKLVTFFDYSQFDATNSVFLTKKEI 330
V +N F Y+ YP+ L ++ ++ DVV++K D+ N++ +E
Sbjct: 371 VHVVNLFDTYVAMKKLKYPKFSLAYLTLRFADVVLDKQYQLADWRARPLRNAMINYARED 430
Query: 331 KTSYPHNFKVRQPRLNHKPFSVTIDVXSDIATDAVIKIFLGPKYNDXGF 477
+++ + + +L + +V S+ ++D IK++ P +N G+
Sbjct: 431 THYLLYSYDMLREQLLKQDTKDLANVYSE-SSDLCIKVYKKPVFNPKGY 478
>AL132860-13|CAB60509.1| 292|Caenorhabditis elegans Hypothetical
protein Y56A3A.15 protein.
Length = 292
Score = 29.5 bits (63), Expect = 2.0
Identities = 22/72 (30%), Positives = 39/72 (54%), Gaps = 3/72 (4%)
Frame = +1
Query: 382 KPFSVTIDVXSDIATDAVIKIFLGPKYNDXGF---PITLEENWHKFYELDWFTHKITPGQ 552
K F V I S+I + ++++F P ++ G PI + H FY L++F K+T
Sbjct: 143 KTFGVKI-ASSEIQSSHLLELF--PSLSNLGVYNVPINTQILTHNFYWLEFFKTKVTL-D 198
Query: 553 NKIVRNSNEFSL 588
+ +V N ++FS+
Sbjct: 199 DILVSNCSKFSI 210
>U97001-5|AAB52260.3| 1592|Caenorhabditis elegans Temporarily
assigned gene nameprotein 59 protein.
Length = 1592
Score = 29.1 bits (62), Expect = 2.6
Identities = 13/50 (26%), Positives = 25/50 (50%)
Frame = -3
Query: 369 WLTNLEVVWVTSLNLFFGQEYTVSGIKLAIVKECD*FLNDNIIDFNADEM 220
W+TNL + NL+F +Y + G L ++ + + +++ F EM
Sbjct: 142 WITNLHYAFQDEKNLYFVMDYYIGGDMLTLLSKFVDHIPESMAKFYIAEM 191
>U80446-3|AAL77180.1| 889|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform b protein.
Length = 889
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 68 NHSTSTPSCPVRLTFTKPHFETLHSISYXT--GLWVTLTHSSIT 193
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>U80446-2|AAB37803.1| 1562|Caenorhabditis elegans Nuclear pore
complex protein protein6, isoform a protein.
Length = 1562
Score = 27.9 bits (59), Expect = 6.0
Identities = 18/44 (40%), Positives = 25/44 (56%), Gaps = 2/44 (4%)
Frame = +2
Query: 68 NHSTSTPSCPVRLTFTKPHFETLHSISYXT--GLWVTLTHSSIT 193
+HS STP P+R + T H + ++ISY T G V +T S T
Sbjct: 189 SHSLSTPGRPIRASVT--HHPSRNTISYCTAEGQLVIVTLGSYT 230
>AC087081-18|AAK66030.1| 124|Caenorhabditis elegans Hypothetical
protein Y82E9BL.1 protein.
Length = 124
Score = 27.9 bits (59), Expect = 6.0
Identities = 13/30 (43%), Positives = 20/30 (66%)
Frame = -3
Query: 549 PRSYLVREPIQFVEFMPVFFQCDGESXIVV 460
P+S L+R+PIQ V+ V CDGE+ + +
Sbjct: 93 PQS-LLRKPIQIVDDCSVKMYCDGEAKLFI 121
>AC084158-23|AAP31422.1| 187|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7c protein.
Length = 187
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 8 QRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 142
QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 109 QRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 150
>AC084158-22|AAM15623.1| 214|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7b protein.
Length = 214
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 8 QRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 142
QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 136 QRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 177
>AC084158-21|AAK68581.1| 271|Caenorhabditis elegans Hypothetical
protein Y69A2AR.7a protein.
Length = 271
Score = 27.9 bits (59), Expect = 6.0
Identities = 16/45 (35%), Positives = 25/45 (55%)
Frame = +2
Query: 8 QRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFETLHS 142
QR+ +D+ + L +C +H+NH+ TP P + T FET S
Sbjct: 182 QRVADDIGEKVLDIC--EHINHNHYTPKMPTK-TEIPEIFETKFS 223
>Z81085-3|CAB03115.1| 769|Caenorhabditis elegans Hypothetical
protein F46F3.4 protein.
Length = 769
Score = 27.5 bits (58), Expect = 7.9
Identities = 13/41 (31%), Positives = 22/41 (53%)
Frame = +2
Query: 8 QRIINDLMKLSLAMCSVQHLNHSTSTPSCPVRLTFTKPHFE 130
Q+ ++L K++ H + STS+ P +TF+ P FE
Sbjct: 328 QQKYSELSKMASTDPHSNHSSPSTSSQKAPTLITFSPPSFE 368
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,455,261
Number of Sequences: 27780
Number of extensions: 270400
Number of successful extensions: 716
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 692
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 716
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1311096392
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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