Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D21
         (471 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb...    26   2.5  
SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr...    26   3.3  
SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subun...    25   5.8  
SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32 |Schi...    25   5.8  
SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces po...    25   5.8  

>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 372

 Score = 26.2 bits (55), Expect = 2.5
 Identities = 19/74 (25%), Positives = 31/74 (41%), Gaps = 1/74 (1%)
 Frame = +2

Query: 221 PTRPVPDSEYFPESKSFRYNNDYIIGFPNQMGPNKRRCRSGNSSSKHQLLYYYFRTQR-R 397
           P R   D+ YF E+    Y+ +YI        P+ R  +     SK + +  +   QR +
Sbjct: 92  PNRNDTDASYFYENDIIDYDIEYIEQKSYSSKPSARVQKDDGGESKDEAILDFLLVQRGK 151

Query: 398 DTRFASVEDAEIAG 439
            T F    +A+  G
Sbjct: 152 CTYFDKALEAQRLG 165


>SPBC29A10.07 |||nucleoporin Pom152|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 1250

 Score = 25.8 bits (54), Expect = 3.3
 Identities = 11/46 (23%), Positives = 25/46 (54%)
 Frame = +3

Query: 282 MIISSVSPIRWVPIKDVADQATAAANINYSTTTSGPSVVIHDSLQL 419
           +++SS+S ++W+ I  +         ++ S     P+ VIH+S ++
Sbjct: 102 LLLSSLSSLKWISIGSILLPYFKKKELSISEHKINPNNVIHNSSRI 147


>SPCC330.13 |rpc37||DNA-directed RNA polymerase III complex subunit
           Rpc37|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 242

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = +2

Query: 230 PVPDSEYFPESKSFRYNN 283
           P+P ++Y+ E K+ +Y N
Sbjct: 80  PIPTTKYYNEDKAMKYGN 97


>SPBP23A10.10 |ppk32||serine/threonine protein kinase Ppk32
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 749

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 19/67 (28%), Positives = 33/67 (49%), Gaps = 3/67 (4%)
 Frame = +3

Query: 201 TNRPNNVRPDRFPIQNISPSQNPFDTIMII---SSVSPIRWVPIKDVADQATAAANINYS 371
           T++P+++ P++    NI  SQ    +  +    SS S  R    +      TA ++ +Y+
Sbjct: 625 TSKPSSISPNK-ATTNIFTSQASLSSQGVARETSSASSYRSYSQRASTPAVTAKSSFHYA 683

Query: 372 TTTSGPS 392
           T TSG S
Sbjct: 684 TPTSGLS 690


>SPACUNK4.08 |||dipeptidyl aminopeptidase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 793

 Score = 25.0 bits (52), Expect = 5.8
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +2

Query: 230 PVPDSEYFPESKSFRYNNDYIIGFPNQMGPN 322
           P+  +E  P    F YN D  I +P    PN
Sbjct: 256 PLYTAELDPSLPEFDYNKDMAIKYPKPGNPN 286


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,968,456
Number of Sequences: 5004
Number of extensions: 38683
Number of successful extensions: 114
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 113
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 114
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 180421690
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)