Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D21
         (471 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_03_0105 + 13455906-13457198                                         30   1.1  
05_04_0073 + 17669311-17671635                                         27   5.8  
03_02_1019 + 13244003-13245202,13245347-13245493,13245772-132460...    27   5.8  
01_06_1264 + 35854600-35856849                                         27   7.6  

>07_03_0105 + 13455906-13457198
          Length = 430

 Score = 29.9 bits (64), Expect = 1.1
 Identities = 20/82 (24%), Positives = 37/82 (45%), Gaps = 1/82 (1%)
 Frame = +3

Query: 222 RPDRFPIQNISPSQNPFDTIMIISSVSPIRWVPIKDVADQATAAANINYSTTTSGPSVVI 401
           RP+R  +Q  +     + + +++ + + +    + D+A      A + Y  TT G   V+
Sbjct: 167 RPNRLAVQRATEG---YSSSLVVDTEALMDGAALADIAYSEEGKAKVVYCLTTHGAVHVL 223

Query: 402 H-DSLQLRMLRLPVHRINPYVA 464
           H D  + R  RL    + P VA
Sbjct: 224 HLDRRRRRRGRLRAVEVEPLVA 245


>05_04_0073 + 17669311-17671635
          Length = 774

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 10/38 (26%), Positives = 22/38 (57%)
 Frame = -1

Query: 144 MHVA*LAIKPRIRIVHSLSILNCNNLKNECDQFVARQI 31
           MH+    + P++  VH LS++  +NL+ +    V+ ++
Sbjct: 503 MHLYSQPLLPKMHYVHPLSVMQVDNLRRQATNIVSTRL 540


>03_02_1019 +
           13244003-13245202,13245347-13245493,13245772-13246099,
           13246930-13246994
          Length = 579

 Score = 27.5 bits (58), Expect = 5.8
 Identities = 13/36 (36%), Positives = 19/36 (52%)
 Frame = +3

Query: 327 DVADQATAAANINYSTTTSGPSVVIHDSLQLRMLRL 434
           DV  Q T   ++         +VV+HD++QLR L L
Sbjct: 327 DVLVQTTRLRSLEMHNNVVQGTVVVHDAIQLRKLHL 362


>01_06_1264 + 35854600-35856849
          Length = 749

 Score = 27.1 bits (57), Expect = 7.6
 Identities = 12/29 (41%), Positives = 21/29 (72%), Gaps = 1/29 (3%)
 Frame = -2

Query: 275 IERILTRGNI-LNREPVWSDVVRSVSAYL 192
           I R   +G++ LN EP+  +V++S+SAY+
Sbjct: 165 ISRDALKGSVTLNGEPLTGNVIKSISAYV 193


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,959,343
Number of Sequences: 37544
Number of extensions: 247680
Number of successful extensions: 609
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 592
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 609
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 955200320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)