Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D21
         (471 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49910-5|CAA90120.1|  411|Caenorhabditis elegans Hypothetical pr...    29   2.2  
U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical pr...    27   5.1  
AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical ...    27   6.8  
AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical ...    27   6.8  

>Z49910-5|CAA90120.1|  411|Caenorhabditis elegans Hypothetical
           protein F44G4.4a protein.
          Length = 411

 Score = 28.7 bits (61), Expect = 2.2
 Identities = 13/23 (56%), Positives = 14/23 (60%)
 Frame = +3

Query: 204 NRPNNVRPDRFPIQNISPSQNPF 272
           NR    RPDR PIQN +P   PF
Sbjct: 358 NRRERDRPDRRPIQNEAPLPMPF 380


>U58751-8|AAB00659.2|  635|Caenorhabditis elegans Hypothetical
           protein C07G1.2 protein.
          Length = 635

 Score = 27.5 bits (58), Expect = 5.1
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +3

Query: 192 QIRTNRPNNVRPDRFPIQNISPSQNPFDTIMIISSVSPIR 311
           Q+R   P+     R P  N+S  + P  T  +IS+  PIR
Sbjct: 511 QMRRTSPSATLAPRLPAWNLSCLREPNCTSTVISTCEPIR 550


>AF125952-1|AAD14701.1|  571|Caenorhabditis elegans Hypothetical
           protein C01B4.9 protein.
          Length = 571

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 266 ILTRGNILNREPVWSDVV--RSVSAYLSSILPGCIYL 162
           I T G IL   P+W+D     SV+  + SIL GC YL
Sbjct: 63  IYTCGKIL--VPIWADQFGSTSVAGAVISILTGCYYL 97


>AC006722-7|AAK68412.2|  544|Caenorhabditis elegans Hypothetical
           protein Y19D10A.12 protein.
          Length = 544

 Score = 27.1 bits (57), Expect = 6.8
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 2/37 (5%)
 Frame = -2

Query: 266 ILTRGNILNREPVWSDVV--RSVSAYLSSILPGCIYL 162
           I T G IL   P+W+D     SV+  + SIL GC YL
Sbjct: 63  IYTCGKIL--VPIWADQFGSTSVAGAVISILTGCYYL 97


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,965,830
Number of Sequences: 27780
Number of extensions: 218310
Number of successful extensions: 556
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 544
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 556
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 850313440
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)