Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D20
         (540 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomy...    28   1.0  
SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr ...    27   1.8  
SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces pom...    26   4.1  
SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr 1|||M...    26   4.1  
SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual         26   4.1  
SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr 3||...    25   5.4  
SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolo...    25   7.2  
SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex...    25   7.2  
SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces po...    25   9.5  
SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyc...    25   9.5  
SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr 1|||...    25   9.5  
SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|ch...    25   9.5  
SPAC14C4.13 |rad17||RFC related checkpoint protein Rad17|Schizos...    25   9.5  

>SPAC23G3.02c |sib1||ferrichrome synthetase Sib1|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 4924

 Score = 27.9 bits (59), Expect = 1.0
 Identities = 15/37 (40%), Positives = 25/37 (67%)
 Frame = +1

Query: 283  LSIAVAKYITISTNN*QHVITSSVLQTAWVPYLNSLG 393
            LSI+ AK  TI  +  +  + S++L T+W+ +LNS+G
Sbjct: 3546 LSISSAKLSTICRSVLKASVNSALL-TSWICFLNSIG 3581


>SPAC1F7.06 |||ThiJ domain protein|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 251

 Score = 27.1 bits (57), Expect = 1.8
 Identities = 12/31 (38%), Positives = 17/31 (54%)
 Frame = +3

Query: 423 LMTSYYFPFAQRPDNYNLHSVKNYEAIRFLD 515
           L+ SYY PF    DN  ++ V  YEA +  +
Sbjct: 20  LLNSYYGPFYDDGDNTGVNVVDLYEAFKVFE 50


>SPBC11B10.08 |||conserved fungal protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 204

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 10/31 (32%), Positives = 15/31 (48%)
 Frame = +3

Query: 369 GSIPEFSWYSPIKTGYYPLMTSYYFPFAQRP 461
           G  P+  +Y P +  YYP   +Y  P   +P
Sbjct: 107 GGYPQQPYYYPNQPNYYPAQPAYAQPVYAQP 137


>SPAC23H3.11c |||glucosidase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 629

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 11/38 (28%), Positives = 23/38 (60%)
 Frame = +3

Query: 48  IYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTF 161
           +YR+K +D   HD K+    ++ EE+ Y+ ++ + + F
Sbjct: 127 VYRSKEEDDDFHDPKSSVVSLMGEED-YLGWSRFCDLF 163


>SPCC622.07 |||dubious|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 128

 Score = 25.8 bits (54), Expect = 4.1
 Identities = 12/34 (35%), Positives = 23/34 (67%), Gaps = 2/34 (5%)
 Frame = -2

Query: 170 IVKESVGIVG-VIHI-LLFLFYNSIINSLCIVKN 75
           + KE   I+  +++I ++FLF N +++ +C VKN
Sbjct: 22  VAKEKYKIIHRLLYISIIFLFLNYVVDIVCYVKN 55


>SPCC622.15c |||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 557

 Score = 25.4 bits (53), Expect = 5.4
 Identities = 17/57 (29%), Positives = 23/57 (40%)
 Frame = +3

Query: 312 NFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYPLMTSYYFPFAQRPDNYNLHS 482
           NFY  +    YF   T G+ S+P F   +      YP   S Y P    P   ++ S
Sbjct: 126 NFYPPIQNSTYFINATGGIDSMPYFG-LNNAPGNIYPF--SMYKPLEADPQYLSVPS 179


>SPAC17A5.16 |||human down-regulated in multiple cancers-1 homolog
           3|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 925

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 19/54 (35%), Positives = 22/54 (40%), Gaps = 1/54 (1%)
 Frame = +3

Query: 243 HLPFWWSSERYGNLKHRRGEI-YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSP 401
           H  FWWS  +  NL     E+   NF   L     FE   N +    EFS  SP
Sbjct: 118 HQKFWWSLRKKRNLPKENSELDLSNFQDDLD----FE---NSISQKNEFSQKSP 164


>SPAC27E2.10c |rfc3|SPAPJ698.01c|DNA replication factor C complex
           subunit Rfc3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 342

 Score = 25.0 bits (52), Expect = 7.2
 Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 5/48 (10%)
 Frame = -2

Query: 461 RPLSEWEIV*SHQGIVTSLNR-----RVPREFRYGTQAVCKTLEVITC 333
           RP +  ++V SH+ I+++L +     RVP    YG     KT  ++ C
Sbjct: 30  RPANLEDVV-SHKDIISTLEKFISSNRVPHMLFYGPPGTGKTSTILAC 76


>SPAC3A12.06c |||sodium/calcium exchanger |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 743

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 9/27 (33%), Positives = 17/27 (62%)
 Frame = +3

Query: 168 NNEEQRLTYLTEDIGFNSYYYYFHSHL 248
           + + Q++ Y+ ++   NSY  Y HSH+
Sbjct: 313 SRKTQKIHYINDNDPSNSYSSYQHSHV 339


>SPAC458.06 |||phosphoinositide binding protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 364

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 7/19 (36%), Positives = 12/19 (63%)
 Frame = +2

Query: 101 LWNCKRGRAVCVLRQLFQH 157
           +WN + G  +C  R+ +QH
Sbjct: 202 IWNSETGEKICEFRRGYQH 220


>SPAC17A5.01 |pex6||peroxin-6 |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 948

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 11/38 (28%), Positives = 22/38 (57%)
 Frame = +3

Query: 66  QDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE 179
           Q+ ++   + + +G+V  E ++V     S TFL +NE+
Sbjct: 128 QNILVQVCQPVRHGVVDSETKFVIERKDSFTFLASNEK 165


>SPCP25A2.03 |||THO complex subunit |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 752

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 16/52 (30%), Positives = 23/52 (44%), Gaps = 2/52 (3%)
 Frame = +3

Query: 126 QYVYYANYSNTFLYNNEEQRLT--YLTEDIGFNSYYYYFHSHLPFWWSSERY 275
           Q  ++   SN  +  N    L+  Y+T D GF S Y Y  S   +  S E +
Sbjct: 265 QNTFFNGKSNPTIDPNSSSLLSEKYITLDKGFPSKYIYSRSLFEYQLSDEDF 316


>SPAC14C4.13 |rad17||RFC related checkpoint protein
           Rad17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 606

 Score = 24.6 bits (51), Expect = 9.5
 Identities = 10/51 (19%), Positives = 24/51 (47%)
 Frame = +3

Query: 60  KMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEEQRLTYLTEDIG 212
           K  D  L  A+ +      + E Y  + NY + ++  +++   ++  +D+G
Sbjct: 346 KGNDFSLEAAQVLERLSKSDSEAYARFKNYKSAYIPKSDKNENSFFKKDVG 396


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,244,564
Number of Sequences: 5004
Number of extensions: 46699
Number of successful extensions: 147
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 143
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 147
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 221892220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)