Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_D20
(540 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_0021 + 11307795-11308093,11308454-11308556,11309623-113099... 31 0.78
01_03_0256 + 14288885-14288936,14289362-14291335,14291648-142916... 28 4.1
12_02_1099 - 26072301-26072468,26072642-26072751,26072966-260730... 28 5.5
06_01_0469 + 3322886-3323564,3324033-3324953,3325025-3325155,332... 28 5.5
02_05_0008 + 24934917-24935229,24936387-24936608,24936876-249375... 28 5.5
09_02_0470 + 9629062-9629355,9629948-9630893,9630948-9631102,963... 27 9.6
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 9.6
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 27 9.6
>08_02_0021 +
11307795-11308093,11308454-11308556,11309623-11309931,
11310190-11310618
Length = 379
Score = 30.7 bits (66), Expect = 0.78
Identities = 20/64 (31%), Positives = 32/64 (50%), Gaps = 2/64 (3%)
Frame = +3
Query: 33 WTLLKIYRTKMQDGILHDAKAINYGIVKEEEQYVYYANYSNTFLYNNEE--QRLTYLTED 206
W L +I+R K G + D I YGI +++Y+ S+ + NE+ T +ED
Sbjct: 280 WCLNRIHRQK---GHVEDHLYI-YGIASTYTRWIYHGEQSDAGINENEDHLDEHTSFSED 335
Query: 207 IGFN 218
+G N
Sbjct: 336 VGIN 339
>01_03_0256 +
14288885-14288936,14289362-14291335,14291648-14291673,
14291855-14292025,14292560-14292647,14292711-14292802,
14292920-14293384,14293860-14294633,14294890-14295087,
14296940-14297374,14297455-14297688,14298042-14298323
Length = 1596
Score = 28.3 bits (60), Expect = 4.1
Identities = 29/116 (25%), Positives = 49/116 (42%), Gaps = 3/116 (2%)
Frame = +3
Query: 201 EDIGFNSYYYYFHSHLPFWWSSERYGNLKHRRGEIYYNFYQQLTTRYYFERLTNGLGSIP 380
+ I F+SY + +P WW +E N EIY + Y++RL G+
Sbjct: 281 QSIPFSSYIWR-RGTIPIWWGAE-IKNAVSVEAEIYVADDPFNGSLQYYQRLGRRYGNKS 338
Query: 381 -EFSWYSPIKTGYYPLMTSYYFPFAQ-RPDNYNLHSVK-NYEAIRFLDIFEKTFVQ 539
E + S K G P++ + +P+ + S K + E +R KT++Q
Sbjct: 339 LEVNATSQKKPGVVPIVCVNLLRYGDGKPETVLVDSFKSSLEYLRSTKKLGKTWIQ 394
>12_02_1099 -
26072301-26072468,26072642-26072751,26072966-26073014,
26073081-26073495,26073604-26074019
Length = 385
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/35 (34%), Positives = 19/35 (54%)
Frame = -2
Query: 113 YNSIINSLCIVKNTVLHFSAINLK*GPYNEIVDNY 9
YNSI+ +LCI + H++ + YN I + Y
Sbjct: 187 YNSILLALCIEQVRAGHYNGSQMNSDGYNAIAEGY 221
>06_01_0469 +
3322886-3323564,3324033-3324953,3325025-3325155,
3325237-3325317,3328173-3328820
Length = 819
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/22 (54%), Positives = 14/22 (63%)
Frame = -1
Query: 507 TVLLRSSLRCVDCSCPAFERMG 442
TVLL +S + C C FERMG
Sbjct: 388 TVLLDTSTMEISCGCRKFERMG 409
>02_05_0008 +
24934917-24935229,24936387-24936608,24936876-24937591,
24937646-24937728,24938448-24938514,24938833-24939228,
24939276-24939318,24939380-24939474,24940287-24940314,
24940636-24940754
Length = 693
Score = 27.9 bits (59), Expect = 5.5
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +3
Query: 177 EQRLTYLTEDIGFNSYYYYFHSHLPFWWSSERYGNLKH 290
E+ + + IG Y Y + PF GNLKH
Sbjct: 281 EESIHFFMRSIGLREYSRYLCFNFPFTHEKSLLGNLKH 318
>09_02_0470 +
9629062-9629355,9629948-9630893,9630948-9631102,
9631299-9631358,9633374-9633444,9633626-9633663,
9633824-9633876,9633970-9635235,9635632-9635672,
9636821-9636887
Length = 996
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/42 (30%), Positives = 26/42 (61%), Gaps = 3/42 (7%)
Frame = -2
Query: 143 GVIHILLFLFYNSIINSLCIVKNTVL---HFSAINLK*GPYN 27
G++ IL F+F+ + S C+V+N ++ +S+ + K G Y+
Sbjct: 487 GILVILSFMFFPFYVCSWCVVRNLLMMIDDYSSSHAKCGRYS 528
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 352 VLQTAWVPYLNSLGTRLLRLVTI 420
+L A+VPYL L + LRLVTI
Sbjct: 1359 MLGKAFVPYLEGLNSTQLRLVTI 1381
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.1 bits (57), Expect = 9.6
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +1
Query: 352 VLQTAWVPYLNSLGTRLLRLVTI 420
+L A+VPYL L + LRLVTI
Sbjct: 1315 MLGKAFVPYLEGLNSTQLRLVTI 1337
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,464,133
Number of Sequences: 37544
Number of extensions: 256045
Number of successful extensions: 676
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 658
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 676
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1198356516
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -