Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D19
         (482 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAPJ696.01c |vps17||retromer complex subunit Vps17|Schizosaccha...    29   0.37 
SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomy...    28   0.64 
SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit ...    27   1.5  
SPAC1834.11c |sec18||secretory pathway protein Sec18 |Schizosacc...    25   4.5  
SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces po...    25   6.0  
SPAC31G5.18c |||ubiquitin family, human C1ORF55 related|Schizosa...    25   6.0  
SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces pomb...    25   7.9  
SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase Pl...    25   7.9  

>SPAPJ696.01c |vps17||retromer complex subunit
           Vps17|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 549

 Score = 29.1 bits (62), Expect = 0.37
 Identities = 9/34 (26%), Positives = 18/34 (52%)
 Frame = +1

Query: 106 SWSNASNDGNETTYDGPINGSYGPNGADGTDETT 207
           +W+N    G  +++DG    ++ P+  DG   T+
Sbjct: 488 AWTNRKRPGYSSSFDGSSQSTFNPSNNDGAHNTS 521


>SPAC2G11.07c |ptc3||protein phosphatase 2C Ptc3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 414

 Score = 28.3 bits (60), Expect = 0.64
 Identities = 17/50 (34%), Positives = 22/50 (44%)
 Frame = +1

Query: 52  SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDE 201
           +ANDG   P     + GP W   S D N+     P       NG+DG D+
Sbjct: 306 AANDGPCAPPEYAENHGPGW--RSGDNNKKVIVPPNFHQVKLNGSDGYDK 353


>SPCC1840.02c |bgs4|orb11, cwg1|1,3-beta-glucan synthase subunit
           Bgs4|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1955

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 20/62 (32%), Positives = 32/62 (51%)
 Frame = +1

Query: 46  DTSANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTPYECTT 225
           D+ AN  +  P+G++  D  + S   N G+ T  DG  +GS+  + A+ T+   PY   T
Sbjct: 140 DSLANVYNSVPYGSSPYDFSNSSFVGNSGSGTPLDGD-SGSFYADSANLTNR-EPYPAWT 197

Query: 226 NE 231
            E
Sbjct: 198 PE 199


>SPAC1834.11c |sec18||secretory pathway protein Sec18
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 792

 Score = 25.4 bits (53), Expect = 4.5
 Identities = 13/33 (39%), Positives = 17/33 (51%), Gaps = 1/33 (3%)
 Frame = +1

Query: 121 SNDGN-ETTYDGPINGSYGPNGADGTDETTPYE 216
           SN G  E     P++GSY  N A  T   +P+E
Sbjct: 11  SNKGTPEQPMRKPLSGSYSHNSAGPTPNMSPFE 43


>SPBC83.11 |||triose phosphate transporter|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 434

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 11/25 (44%), Positives = 18/25 (72%)
 Frame = -2

Query: 310 PILSLLNYNNFMFKNMYTLHTKFSL 236
           P+ ++L Y  FMF+++Y+  T FSL
Sbjct: 107 PLFTVLAYR-FMFRHVYSAMTYFSL 130


>SPAC31G5.18c |||ubiquitin family, human C1ORF55
           related|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 263

 Score = 25.0 bits (52), Expect = 6.0
 Identities = 14/50 (28%), Positives = 24/50 (48%)
 Frame = +1

Query: 49  TSANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTD 198
           TSA+  S   +GAT D+       +N+ +  ++   +  S   N A+G D
Sbjct: 195 TSASSFSSGSNGATTDEPAEKEARNNNSSINSWSRRMQASESSNEAEGED 244


>SPCC290.03c |nup186||nucleoporin Nup186|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1647

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 12/28 (42%), Positives = 18/28 (64%)
 Frame = +2

Query: 326 YYISDVYTVQKVVTFERVSIVYTSLSDL 409
           YYIS +  VQ VVT   ++ V+T  S++
Sbjct: 552 YYISHLKPVQTVVTSSGLARVHTDPSEI 579


>SPBC776.14 |plh1||phospholipid-diacylglycerol acyltransferase
           Plh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 623

 Score = 24.6 bits (51), Expect = 7.9
 Identities = 9/19 (47%), Positives = 13/19 (68%)
 Frame = +1

Query: 46  DTSANDGSRRPHGATYDDG 102
           D+S NDG++  +G   DDG
Sbjct: 507 DSSVNDGTKVENGIVMDDG 525


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,690,489
Number of Sequences: 5004
Number of extensions: 34001
Number of successful extensions: 95
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 92
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 186042952
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)