Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D19
         (482 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_08_0234 - 16067579-16068157                                         29   2.0  
05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268     28   3.4  
09_04_0628 + 19093665-19094033,19094408-19094722                       28   4.5  
08_02_0154 - 13324384-13325351,13326306-13326502,13326695-133272...    28   4.5  
10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955     27   6.0  
04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637     27   6.0  
11_04_0026 - 12446179-12446399,12446604-12447303                       27   7.9  
10_02_0121 - 5513491-5513630,5514765-5514850,5515206-5515333           27   7.9  
10_01_0212 - 2278447-2279580                                           27   7.9  
04_03_0008 + 9296711-9298096                                           27   7.9  

>10_08_0234 - 16067579-16068157
          Length = 192

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 16/40 (40%), Positives = 22/40 (55%)
 Frame = +1

Query: 64  GSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNG 183
           GS      TY  GPS++NA  +GN    +G   G+YG +G
Sbjct: 142 GSGSSSANTYYGGPSYANADANGNG---NGKGTGTYGGSG 178


>05_03_0499 - 14733380-14733394,14733948-14733975,14735286-14736268
          Length = 341

 Score = 28.3 bits (60), Expect = 3.4
 Identities = 12/24 (50%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 295 KVTILGIL-NGILYF*CIYCSESG 363
           KV ++G+  N    F C+YCSESG
Sbjct: 178 KVVLVGVAGNNTQMFACVYCSESG 201


>09_04_0628 + 19093665-19094033,19094408-19094722
          Length = 227

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 1/35 (2%)
 Frame = -2

Query: 331 IIFHL-VYPILSLLNYNNFMFKNMYTLHTKFSLFI 230
           ++ H+ V P+L LL       KN+Y + TKFS FI
Sbjct: 76  VVVHVPVDPVLVLLLGPQEQRKNLYPISTKFSTFI 110


>08_02_0154 -
           13324384-13325351,13326306-13326502,13326695-13327274,
           13328324-13328446,13328803-13329130
          Length = 731

 Score = 27.9 bits (59), Expect = 4.5
 Identities = 15/47 (31%), Positives = 19/47 (40%)
 Frame = +1

Query: 73  RPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTPY 213
           R HG  Y    S ++      E  Y G  N  Y P G  G ++  PY
Sbjct: 102 RKHGNDYRSH-SGNDCPGTHEEAMYMGNNNNGYHPQGGQGWNQPCPY 147


>10_08_0219 - 15972061-15972110,15972411-15972632,15972673-15972955
          Length = 184

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 12/43 (27%), Positives = 15/43 (34%)
 Frame = +1

Query: 91  YDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTPYEC 219
           Y  G + +     G      GP    YG     G+   TPY C
Sbjct: 133 YGGGYAQAGGQGGGGGGGQSGPGGSGYGSGSGSGSGNQTPYMC 175


>04_03_0328 + 14440877-14441479,14441650-14441955,14442032-14442637
          Length = 504

 Score = 27.5 bits (58), Expect = 6.0
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = -2

Query: 292 NYNNFMFKNMYTLHTKFSLFIHWWCIHK 209
           N+N  MFKN+ T   +F +++  WC  K
Sbjct: 475 NHNRVMFKNISTKEARF-MWLRRWCQQK 501


>11_04_0026 - 12446179-12446399,12446604-12447303
          Length = 306

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/38 (31%), Positives = 17/38 (44%)
 Frame = +1

Query: 100 GPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTPY 213
           G S ++      E  Y G  N  Y P G +G ++  PY
Sbjct: 94  GHSGNDCPETREEAMYIGNNNNRYRPQGGEGWNQPCPY 131


>10_02_0121 - 5513491-5513630,5514765-5514850,5515206-5515333
          Length = 117

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 16/47 (34%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
 Frame = +1

Query: 91  YDDGPSWSNASNDGNETTYDGPINGSY-GPNGADGTDETTPYECTTN 228
           YDDG S + +S+DG        I G   G +G  G      Y  TT+
Sbjct: 40  YDDGSSRNLSSSDGEGGAGQSGIGGPITGNSGGTGQHAAPKYRSTTH 86


>10_01_0212 - 2278447-2279580
          Length = 377

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 11/24 (45%), Positives = 16/24 (66%), Gaps = 1/24 (4%)
 Frame = +1

Query: 295 KVTILGIL-NGILYF*CIYCSESG 363
           +V ++G+  N    F C+YCSESG
Sbjct: 175 RVVLVGVAGNNTQMFACVYCSESG 198


>04_03_0008 + 9296711-9298096
          Length = 461

 Score = 27.1 bits (57), Expect = 7.9
 Identities = 12/38 (31%), Positives = 16/38 (42%)
 Frame = +1

Query: 100 GPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTPY 213
           G S ++      E  Y G  N  Y P G  G ++  PY
Sbjct: 151 GHSGNDCPETHEEAMYMGKNNNEYRPQGGQGWNQPRPY 188


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,592,478
Number of Sequences: 37544
Number of extensions: 199878
Number of successful extensions: 589
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 576
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 589
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 987904180
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)