Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D19
         (482 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical pr...    31   0.58 
Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical pr...    30   0.77 
U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical pr...    29   1.8  
U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbona...    29   2.3  
AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion transpo...    29   2.3  
Z68320-1|CAB63328.2|  278|Caenorhabditis elegans Hypothetical pr...    28   4.1  
U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical pr...    28   4.1  
D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like prot...    28   4.1  
AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a...    28   4.1  
AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a...    28   4.1  
Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical pr...    27   7.1  
U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger ...    27   7.1  
AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H...    27   7.1  

>Z82083-3|CAB04971.1|  756|Caenorhabditis elegans Hypothetical
           protein ZK1010.5 protein.
          Length = 756

 Score = 30.7 bits (66), Expect = 0.58
 Identities = 22/61 (36%), Positives = 26/61 (42%)
 Frame = +1

Query: 46  DTSANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETTPYECTT 225
           D S N G   P   T  D P+   + N  N TT D   NGS  P+  DG    T    TT
Sbjct: 67  DPSPNAGV--PSNGTQSD-PAGDGSMNKANTTTADS--NGSLNPDDGDGKSLLTDRNSTT 121

Query: 226 N 228
           +
Sbjct: 122 S 122


>Z83217-2|CAB05680.2|  319|Caenorhabditis elegans Hypothetical
           protein C10C6.3 protein.
          Length = 319

 Score = 30.3 bits (65), Expect = 0.77
 Identities = 17/52 (32%), Positives = 26/52 (50%)
 Frame = +1

Query: 52  SANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGADGTDETT 207
           ++  G +    AT ++G  W  A   G   T+  PI+ ++G  G  GTD TT
Sbjct: 90  ASEKGEKITFKATGNNGSIWVAALMSG---TFTSPIHETHGHTGGTGTDGTT 138


>U55857-1|AAA98026.1|  394|Caenorhabditis elegans Hypothetical
           protein K08D10.10 protein.
          Length = 394

 Score = 29.1 bits (62), Expect = 1.8
 Identities = 14/31 (45%), Positives = 17/31 (54%)
 Frame = +1

Query: 106 SWSNASNDGNETTYDGPINGSYGPNGADGTD 198
           SW NAS+  N+  Y  P + SY  NG   TD
Sbjct: 321 SWYNASSTSNDGFYGYPGSPSYEKNGTIRTD 351


>U23175-3|AAC46712.2|  959|Caenorhabditis elegans Anion/bicarbonate
           transporter familyprotein 3, isoform a protein.
          Length = 959

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 64  GSRRPHGATYDDGPSWSNASNDG----NETTYDGPINGSYGPNGADGTDETTPYEC 219
           G+R P G    +G S SN++N+G    +   +D   +GS        +   TP  C
Sbjct: 78  GTRTPGGIVLTNGASNSNSTNNGGVHRSRRRHDSDASGSANSEATVASGANTPRRC 133


>AY887905-1|AAX34417.1|  959|Caenorhabditis elegans anion
           transporter ABTS-3 protein.
          Length = 959

 Score = 28.7 bits (61), Expect = 2.3
 Identities = 16/56 (28%), Positives = 25/56 (44%), Gaps = 4/56 (7%)
 Frame = +1

Query: 64  GSRRPHGATYDDGPSWSNASNDG----NETTYDGPINGSYGPNGADGTDETTPYEC 219
           G+R P G    +G S SN++N+G    +   +D   +GS        +   TP  C
Sbjct: 78  GTRTPGGIVLTNGASNSNSTNNGGVHRSRRRHDSDASGSANSEATVASGANTPRRC 133


>Z68320-1|CAB63328.2|  278|Caenorhabditis elegans Hypothetical
           protein W07A12.5 protein.
          Length = 278

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 18/50 (36%), Positives = 22/50 (44%), Gaps = 1/50 (2%)
 Frame = +1

Query: 64  GSRRPHGATYDDGPSWSNASNDGNETTYD-GPINGSYGPNGADGTDETTP 210
           G   P G     GP        GN    + GPI G+ GP G+DG+ E  P
Sbjct: 222 GPSGPDGKIGATGPGGDPGKPGGNGIPGEPGPI-GNQGPRGSDGSCEHCP 270


>U23523-9|AAC46564.1|  147|Caenorhabditis elegans Hypothetical
           protein F53A9.9 protein.
          Length = 147

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/27 (48%), Positives = 17/27 (62%)
 Frame = +1

Query: 118 ASNDGNETTYDGPINGSYGPNGADGTD 198
           A+N GN   Y+GP NG YG  G +G +
Sbjct: 2   ANNYGN-AGYNGPTNGPYGNAGYNGAN 27


>D10877-1|BAA01645.1|  346|Caenorhabditis elegans hnRNP like protein
           protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +1

Query: 55  ANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGAD 189
           + DG R  +      G  W   +  G    Y GP  G  G  G D
Sbjct: 211 SRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGD 255


>AF038613-7|ABB51185.1|  308|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform c protein.
          Length = 308

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +1

Query: 55  ANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGAD 189
           + DG R  +      G  W   +  G    Y GP  G  G  G D
Sbjct: 173 SRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGD 217


>AF038613-5|AAB92051.1|  346|Caenorhabditis elegans Human hnrnp a1
           homolog protein1, isoform a protein.
          Length = 346

 Score = 27.9 bits (59), Expect = 4.1
 Identities = 13/45 (28%), Positives = 16/45 (35%)
 Frame = +1

Query: 55  ANDGSRRPHGATYDDGPSWSNASNDGNETTYDGPINGSYGPNGAD 189
           + DG R  +      G  W   +  G    Y GP  G  G  G D
Sbjct: 211 SRDGQRGGYNGGGGGGGGWGGPAQRGGPGAYGGPGGGGQGGYGGD 255


>Z68882-1|CAA93105.1|  487|Caenorhabditis elegans Hypothetical
           protein C47E12.1 protein.
          Length = 487

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 14/35 (40%), Positives = 23/35 (65%), Gaps = 1/35 (2%)
 Frame = -1

Query: 389 KQWTLF-QMSPLSEQYIHQKYNIPFSIPNIVTFKL 288
           + WTLF +M   +E Y +Q+  IP+ + NIV+ +L
Sbjct: 336 ESWTLFDEMIGNAESY-YQELQIPYQVVNIVSGEL 369


>U21317-1|AAA62524.2|  627|Caenorhabditis elegans Na/h exchanger
           protein 2 protein.
          Length = 627

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 364 HHFLNSIYIRNIIFHLVYPILSLLNYNNFMFKNMYTLHTKFSLFI 230
           HH+  S  +  ++F L+Y  L ++    F+ K     +TK   FI
Sbjct: 342 HHWDTSFIVLTVVFCLIYRTLGVVVMCYFLNKYRLNKYTKVDQFI 386


>AF497824-1|AAM18102.1|  644|Caenorhabditis elegans putative Na-H
           exchanger isoform 2 protein.
          Length = 644

 Score = 27.1 bits (57), Expect = 7.1
 Identities = 13/45 (28%), Positives = 22/45 (48%)
 Frame = -2

Query: 364 HHFLNSIYIRNIIFHLVYPILSLLNYNNFMFKNMYTLHTKFSLFI 230
           HH+  S  +  ++F L+Y  L ++    F+ K     +TK   FI
Sbjct: 359 HHWDTSFIVLTVVFCLIYRTLGVVVMCYFLNKYRLNKYTKVDQFI 403


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,326,988
Number of Sequences: 27780
Number of extensions: 192807
Number of successful extensions: 605
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 570
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 604
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 892829112
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)