Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_D18
(400 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
04_04_0451 - 25323178-25323241,25323614-25323741,25324533-253246... 27 5.5
02_04_0622 - 24508508-24508666,24509533-24509634,24510108-245101... 27 5.5
06_03_0791 - 24641350-24641418,24641684-24641965,24642318-246425... 27 7.2
03_01_0207 - 1633177-1633372,1633623-1633688,1633778-1633859,163... 27 7.2
09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,995... 26 9.5
08_01_0514 + 4481383-4481903,4482532-4484590,4485038-4485107,448... 26 9.5
02_04_0244 - 21248449-21249038,21249240-21249438,21249963-212502... 26 9.5
01_01_0924 + 7301611-7301737,7301890-7302518 26 9.5
>04_04_0451 - 25323178-25323241,25323614-25323741,25324533-25324634,
25325314-25325382,25325489-25325557,25325646-25325720,
25325805-25325909,25326394-25326492,25326626-25328344,
25328629-25328931,25329031-25329129,25329733-25329850,
25329933-25330018,25330091-25330159,25330232-25330306,
25330675-25330772,25331271-25331432,25332391-25332556,
25332902-25332970,25333064-25333126,25333221-25333376,
25334027-25334365
Length = 1410
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 255 VLQTAWVPYLNSLGTRLLRLVTI 323
+L A+VPYL L + LRLVTI
Sbjct: 1359 MLGKAFVPYLEGLNSTQLRLVTI 1381
>02_04_0622 - 24508508-24508666,24509533-24509634,24510108-24510176,
24510294-24510362,24510428-24510502,24510584-24510688,
24511309-24511407,24511521-24513230,24513489-24513788,
24514748-24514846,24514962-24515079,24515166-24515251,
24515334-24515402,24515746-24515843,24516373-24516534,
24516779-24516787,24516970-24516991,24517620-24517712,
24517872-24517940,24518720-24518782,24518882-24519037,
24520895-24521230
Length = 1355
Score = 27.1 bits (57), Expect = 5.5
Identities = 13/23 (56%), Positives = 16/23 (69%)
Frame = +3
Query: 255 VLQTAWVPYLNSLGTRLLRLVTI 323
+L A+VPYL L + LRLVTI
Sbjct: 1315 MLGKAFVPYLEGLNSTQLRLVTI 1337
>06_03_0791 -
24641350-24641418,24641684-24641965,24642318-24642537,
24642657-24642776,24643056-24643132,24643220-24643339,
24644121-24644186,24644265-24644479,24645450-24645582,
24646562-24646708,24647301-24647596,24648222-24648319,
24648425-24648471,24649340-24649449,24649663-24649735,
24650795-24650899
Length = 725
Score = 26.6 bits (56), Expect = 7.2
Identities = 10/21 (47%), Positives = 14/21 (66%)
Frame = +3
Query: 48 YSNTFLYNNEEQRLTYLTEDI 110
YS + NEE RL+YL +D+
Sbjct: 465 YSTVLYHLNEEMRLSYLAQDL 485
>03_01_0207 -
1633177-1633372,1633623-1633688,1633778-1633859,
1633942-1634037,1634413-1634518,1634602-1634661,
1635114-1635234,1635929-1636040,1636118-1636217,
1636328-1636382,1636489-1636595,1636798-1636850,
1636989-1637114,1637909-1638065,1638226-1638421,
1638917-1639073,1639139-1639379,1639475-1639605,
1639704-1639826,1639929-1639984,1640610-1640767,
1640847-1640984,1641070-1641123
Length = 896
Score = 26.6 bits (56), Expect = 7.2
Identities = 11/33 (33%), Positives = 18/33 (54%)
Frame = +3
Query: 15 WNEREAMCYANYSNTFLYNNEEQRLTYLTEDIG 113
+N +A+C F++ NE R TY+ E +G
Sbjct: 94 FNRIKALCSNKARRFFVFTNEHHRDTYVKEMVG 126
>09_02_0501 - 9955987-9956244,9956329-9956583,9956713-9956884,
9957000-9957227,9959102-9959235,9959319-9959402,
9959539-9959829,9960076-9960405,9960526-9960668,
9960970-9961126,9961210-9961313,9961423-9961583,
9961664-9961980,9962094-9962375,9962471-9962772,
9962848-9962938,9963262-9963338,9963428-9963587,
9963682-9963766,9963838-9963949,9964864-9964943,
9968644-9968981
Length = 1386
Score = 26.2 bits (55), Expect = 9.5
Identities = 13/55 (23%), Positives = 24/55 (43%), Gaps = 3/55 (5%)
Frame = +2
Query: 209 YYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGYYP---LMTSYYFPFAQRP 364
+Y F+ T YY +G P ++ + + TG+Y L + + P + P
Sbjct: 1250 WYLFFMYFTLSYYTFYGMMAVGLTPNYNMSTVVSTGFYTMWNLFSGFLIPLTRIP 1304
>08_01_0514 +
4481383-4481903,4482532-4484590,4485038-4485107,
4485434-4485660,4486238-4486324,4486408-4487114,
4487206-4487270,4487323-4487837,4487898-4487991,
4488116-4488398,4488494-4488689,4488913-4489254
Length = 1721
Score = 26.2 bits (55), Expect = 9.5
Identities = 14/32 (43%), Positives = 18/32 (56%)
Frame = +2
Query: 116 QFHISYYFHSHLPFWWSSERYGNLKHRRGEIY 211
+ HI+Y F +P W SS GNLK + IY
Sbjct: 668 KLHITYCFICKVPNWMSS--LGNLKELKLYIY 697
>02_04_0244 -
21248449-21249038,21249240-21249438,21249963-21250212,
21250552-21250577
Length = 354
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/41 (36%), Positives = 18/41 (43%)
Frame = +2
Query: 197 RGEIYYNFYQQLTTRYYFERLTNGLGSIPEFSWYSPIKTGY 319
R Y N Q+ YY +R TNG I E + S GY
Sbjct: 17 RSRCYNNLPQEHVQLYYSQRATNGGLLIAEATGVSETAQGY 57
>01_01_0924 + 7301611-7301737,7301890-7302518
Length = 251
Score = 26.2 bits (55), Expect = 9.5
Identities = 15/32 (46%), Positives = 20/32 (62%)
Frame = +3
Query: 123 ILATTSTRTCLSGGVLRDMVTLSIAVAKYITI 218
+LAT +SGG L VTLS+AV +IT+
Sbjct: 68 VLATAGFH--VSGGHLNPAVTLSLAVGGHITL 97
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,258,958
Number of Sequences: 37544
Number of extensions: 186406
Number of successful extensions: 516
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 503
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 516
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 682720236
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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