Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D17
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC31G5.10 |eta2||Myb family transcriptional regulator Eta2|Sch...    28   0.91 
SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|c...    25   4.8  
SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA syntheta...    25   8.4  

>SPAC31G5.10 |eta2||Myb family transcriptional regulator
           Eta2|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 569

 Score = 27.9 bits (59), Expect = 0.91
 Identities = 15/51 (29%), Positives = 32/51 (62%), Gaps = 1/51 (1%)
 Frame = +1

Query: 7   MTTNKSRETVCKQLEKM-TPLDKLQERRAWRDACLTRLSILKKEMNKKYNS 156
           + T+ SR+ + + L+++  PLD  ++R AW ++ L +L  L ++   ++NS
Sbjct: 302 LPTSISRKGIIRYLKEIYKPLDP-KDRNAWEESELKKLYTLVEQEGTRWNS 351


>SPBC2A9.05c |||DUF846 family protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 219

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 11/53 (20%), Positives = 28/53 (52%)
 Frame = +3

Query: 126 QERNEQEI*QLNKYTLY*KNCFFYLFY*NKFLISYFSCVLFFFNYLIFRLCLF 284
           QERN   + Q+ + + +    FF+L +    +++Y   + F  ++++  + +F
Sbjct: 31  QERNASRLPQMFQMSSHPVALFFFLLFRTGAIVAYILGMFFTSSFMLLFIVIF 83


>SPAC30C2.04 |||cofactor for methionyl-and glutamyl-tRNA synthetases
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 450

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +1

Query: 31  TVCKQLEKMTPLDKLQERR 87
           TVC  L K  PL+++Q+R+
Sbjct: 316 TVCSGLVKYIPLEQMQQRK 334


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,785,028
Number of Sequences: 5004
Number of extensions: 33263
Number of successful extensions: 85
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 84
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 85
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)