Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D17
         (502 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

09_04_0373 - 17037945-17040641                                         29   1.6  
01_06_1353 + 36533795-36533827,36533904-36533993,36535595-365356...    28   3.7  
07_01_0120 - 918901-920436                                             27   8.5  

>09_04_0373 - 17037945-17040641
          Length = 898

 Score = 29.5 bits (63), Expect = 1.6
 Identities = 10/25 (40%), Positives = 17/25 (68%)
 Frame = -1

Query: 106 GRHRATHDVPVIYPGVSSFLIVCIL 32
           G   A H VP++ P V++FL++ +L
Sbjct: 441 GSSSANHTVPIVLPSVAAFLLLAVL 465


>01_06_1353 +
           36533795-36533827,36533904-36533993,36535595-36535681,
           36535775-36535843,36536472-36536552,36536641-36536712,
           36536814-36536874,36536960-36537062,36537223-36537318,
           36537394-36537440,36538052-36538299
          Length = 328

 Score = 28.3 bits (60), Expect = 3.7
 Identities = 17/46 (36%), Positives = 24/46 (52%), Gaps = 1/46 (2%)
 Frame = -2

Query: 144 LVHFFLENRKPGEAGIAPRTT-FL*FIQGCHLF*LFAYCFSALICC 10
           LV FF++N+ PGE+    R   FL  + G       A+C SA+  C
Sbjct: 236 LVVFFIDNKLPGESARRQRMLGFLCMMTGFSGASAPAFCLSAMAIC 281


>07_01_0120 - 918901-920436
          Length = 511

 Score = 27.1 bits (57), Expect = 8.5
 Identities = 13/29 (44%), Positives = 19/29 (65%)
 Frame = +1

Query: 64  LDKLQERRAWRDACLTRLSILKKEMNKKY 150
           +D+ +ER     A L +LSIL+KEM + Y
Sbjct: 52  VDEAEERCITNQAMLEQLSILRKEMFRGY 80


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,322,800
Number of Sequences: 37544
Number of extensions: 170644
Number of successful extensions: 313
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 309
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 312
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)