Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D15
         (494 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange facto...    29   0.51 
SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces p...    28   0.67 
SPBC725.07 |pex5||peroxisomal targeting signal receptor |Schizos...    25   4.7  

>SPAC26F1.01 |sec74|SPAPJ691.01c|guanyl-nucleotide exchange factor
           Sec74|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 928

 Score = 28.7 bits (61), Expect = 0.51
 Identities = 13/44 (29%), Positives = 23/44 (52%)
 Frame = +3

Query: 72  LQNNLIYRYKKFNKSRFKLTYAKEDY*LHSCLNCYYRQFFPTQV 203
           L+ N++ +  +  K +  + + KED  + S L  Y R  FP+ V
Sbjct: 787 LKKNMLAQMIEIQKFKISIKFLKEDLEMDSHLQDYLRSVFPSSV 830


>SPAC20G8.09c |||N-acetyltransferase Nat10 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1033

 Score = 28.3 bits (60), Expect = 0.67
 Identities = 17/69 (24%), Positives = 33/69 (47%), Gaps = 2/69 (2%)
 Frame = -1

Query: 353 TIFSFNYLTTGFHXXXXXXXXXXXXXXXXIEIKLSADSGSAPFFILEI*IDLRRKKL--P 180
           T+FS++ ++  F                  +++L +D+ +   F+L   +DL+  KL  P
Sbjct: 511 TLFSYHPISEAFLQRMMSLYVASHYKNSPNDLQLMSDAPAHQLFVLLPPVDLKNPKLPDP 570

Query: 179 IIAIQAAMQ 153
           I  IQ A++
Sbjct: 571 ICVIQLALE 579


>SPBC725.07 |pex5||peroxisomal targeting signal receptor
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 598

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/31 (35%), Positives = 16/31 (51%)
 Frame = +2

Query: 359 NHSIVIMNLVIMPTWPVGVFRQHRARISNFN 451
           N S+ +  LV +  W V  F Q+R R +  N
Sbjct: 374 NQSLNVQALVCLEDWIVNSFPQYRNRFAKIN 404


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,585,563
Number of Sequences: 5004
Number of extensions: 29279
Number of successful extensions: 54
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 53
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 54
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 194131776
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)