Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D15
         (494 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_03_0554 - 17075142-17075159,17075788-17076591,17076619-170767...    32   0.29 
10_08_0074 - 14668625-14669797                                         30   1.2  
06_03_0272 + 19053455-19053587,19054665-19056627,19056827-190568...    29   2.1  
10_08_0079 + 14704086-14705195                                         29   2.7  
02_02_0322 - 8938101-8938149,8938235-8938458,8938545-8938605,893...    29   2.7  
03_02_0223 + 6548810-6549025,6549159-6549211,6549457-6549492,654...    28   3.6  
04_03_0990 - 21481459-21481933,21482140-21482771                       27   8.3  
01_02_0070 - 10817675-10818024,10818228-10818893,10819094-108191...    27   8.3  

>04_03_0554 -
           17075142-17075159,17075788-17076591,17076619-17076719,
           17077095-17077751,17077827-17078768,17078837-17078896,
           17079131-17079763,17079886-17079942,17080177-17080702
          Length = 1265

 Score = 31.9 bits (69), Expect = 0.29
 Identities = 17/58 (29%), Positives = 24/58 (41%)
 Frame = -3

Query: 453 KLKLEIRALCCRNTPTGQVGIITKFIITILWFSYDFFLQLFNNGFSHVTSPFSYPDVF 280
           K + E +  CCRN  T      T   +  LW S D + Q F N        FS+  ++
Sbjct: 479 KFEHETKGFCCRNGQTRLAHQDTPPELMRLWTSNDSYAQHFRNNIRFFNGHFSFTSLY 536


>10_08_0074 - 14668625-14669797
          Length = 390

 Score = 29.9 bits (64), Expect = 1.2
 Identities = 11/22 (50%), Positives = 14/22 (63%)
 Frame = -2

Query: 436 TGSMLPEHTYRPGGHYYQIHYY 371
           TGS L    +  GGH ++IHYY
Sbjct: 54  TGSALKSRAFTIGGHQWRIHYY 75


>06_03_0272 +
           19053455-19053587,19054665-19056627,19056827-19056887,
           19056975-19057198,19057573-19057642,19058453-19058515
          Length = 837

 Score = 29.1 bits (62), Expect = 2.1
 Identities = 9/14 (64%), Positives = 11/14 (78%)
 Frame = +3

Query: 159 SCLNCYYRQFFPTQ 200
           SC NCY+R+F P Q
Sbjct: 348 SCFNCYHREFLPVQ 361


>10_08_0079 + 14704086-14705195
          Length = 369

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 11/22 (50%), Positives = 13/22 (59%)
 Frame = -2

Query: 436 TGSMLPEHTYRPGGHYYQIHYY 371
           TGS LP   +  GGH + I YY
Sbjct: 45  TGSFLPSSPFTVGGHRWNIKYY 66


>02_02_0322 -
           8938101-8938149,8938235-8938458,8938545-8938605,
           8938724-8940761,8940797-8940908,8942037-8942047,
           8942293-8942443
          Length = 881

 Score = 28.7 bits (61), Expect = 2.7
 Identities = 9/14 (64%), Positives = 12/14 (85%)
 Frame = +3

Query: 159 SCLNCYYRQFFPTQ 200
           SCL+CY+R+F P Q
Sbjct: 403 SCLHCYHREFLPVQ 416


>03_02_0223 +
           6548810-6549025,6549159-6549211,6549457-6549492,
           6549786-6549933,6550078-6550185,6550757-6550824,
           6551846-6551969,6552067-6552213,6552545-6552805,
           6552885-6553169,6553796-6553939,6554565-6554915,
           6555405-6555470,6555598-6555768
          Length = 725

 Score = 28.3 bits (60), Expect = 3.6
 Identities = 10/32 (31%), Positives = 19/32 (59%)
 Frame = -3

Query: 456 NKLKLEIRALCCRNTPTGQVGIITKFIITILW 361
           NK+KL +R L CR      + +++K +  ++W
Sbjct: 656 NKVKLAVRLLICRLLSLWPLIVLSKLLFALIW 687


>04_03_0990 - 21481459-21481933,21482140-21482771
          Length = 368

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -2

Query: 436 TGSMLPEHTYRPGGHYYQIHYY 371
           TGS +   ++R GGH + + YY
Sbjct: 42  TGSDIKSRSFRAGGHSWHLRYY 63


>01_02_0070 -
           10817675-10818024,10818228-10818893,10819094-10819124,
           10820038-10820164,10820279-10820736
          Length = 543

 Score = 27.1 bits (57), Expect = 8.3
 Identities = 15/36 (41%), Positives = 22/36 (61%), Gaps = 2/36 (5%)
 Frame = -1

Query: 440 RYGLYAAGTHLQA-RWALLPNSLLQYYGFLT-IFSF 339
           R  L+  G H  A R +LLP SL+ Y+G L+ +F +
Sbjct: 139 RSPLFPGGNHAAASRNSLLPRSLIIYFGVLSNVFGY 174


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,509,426
Number of Sequences: 37544
Number of extensions: 162983
Number of successful extensions: 320
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 318
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 320
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1035514020
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)