Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D14
         (438 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces p...   100   8e-23
SPCC553.04 |cyp9||WD repeat containing cyclophilin family peptid...    29   0.24 
SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyce...    28   0.55 
SPBC19C2.02 |pmt1||DNA methyltransferase homolog|Schizosaccharom...    26   2.9  
SPCC61.02 |spt3||histone acetyltransferase complex subunit Spt3|...    26   2.9  

>SPBC31F10.12 |||RNA-binding protein Tma20 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 184

 Score =  100 bits (240), Expect = 8e-23
 Identities = 50/105 (47%), Positives = 68/105 (64%), Gaps = 1/105 (0%)
 Frame = +2

Query: 14  VKCHDHIEIMVNSAGELLFFRHREGPWMPTLRLLHKYPFFLPMQQVDKGAIRFVLSGANI 193
           +KC D +  +    GE++ F+H +GP +P+LRL+HK P      +VD+GAI+F+LSGANI
Sbjct: 56  IKCEDRL-FLYTLNGEIILFQHFDGPIIPSLRLVHKCPDAFTQVRVDRGAIKFLLSGANI 114

Query: 194 MCPGLTSPGARM-SSVEKGQVVAVMAEGKEHALAIGTTALSTDDM 325
           M PGL S G  +   +EK Q V V AEGKE   AIG T +S  +M
Sbjct: 115 MIPGLVSKGGNLPDDIEKDQYVIVTAEGKEAPAAIGLTKMSAKEM 159


>SPCC553.04 |cyp9||WD repeat containing cyclophilin family
           peptidyl-prolyl cis-trans isomerase
           Cyp9|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 610

 Score = 29.5 bits (63), Expect = 0.24
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = +2

Query: 227 MSSVEKGQVVAVMAEGKEHALAIGTTAL 310
           MS VE G+ +A+  + ++H L +GTTA+
Sbjct: 301 MSHVELGRRIAIERDIEKHGLTVGTTAI 328


>SPBP35G2.10 |mit1||SHREC complex subunit Mit1|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1418

 Score = 28.3 bits (60), Expect = 0.55
 Identities = 10/23 (43%), Positives = 14/23 (60%)
 Frame = +3

Query: 48  TVLENYCSSVTVRVLGCRRYVFF 116
           ++L NYC S+  R   CRR  +F
Sbjct: 304 SILVNYCKSIRFRCFRCRRVEYF 326


>SPBC19C2.02 |pmt1||DNA methyltransferase
           homolog|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 330

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 9/16 (56%), Positives = 11/16 (68%)
 Frame = +1

Query: 226 DVVS*EGSSCCCHGRG 273
           D+V  + SSCCC  RG
Sbjct: 226 DIVKPDSSSCCCFTRG 241


>SPCC61.02 |spt3||histone acetyltransferase complex subunit
           Spt3|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 307

 Score = 25.8 bits (54), Expect = 2.9
 Identities = 13/43 (30%), Positives = 27/43 (62%), Gaps = 2/43 (4%)
 Frame = +2

Query: 242 KGQVVAVMAEGKEHALAIGTTALSTDDM*DLVRW--RKINTLE 364
           +GQV+ ++ +  E AL  G+ +++ +D+  L+R    K+N L+
Sbjct: 40  RGQVMEMLIQANELALRRGSRSITVEDLFFLIRHDRAKVNRLK 82


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,876,363
Number of Sequences: 5004
Number of extensions: 38222
Number of successful extensions: 69
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 67
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 68
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 158122380
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)