Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_D14
(438 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0032 - 11795368-11795385,11795607-11795670,11795979-117960... 91 5e-19
02_04_0233 - 21135743-21135867,21135970-21136340,21136486-211367... 47 6e-06
05_03_0095 - 8349971-8350171,8350659-8351303 31 0.53
12_01_0255 + 1888193-1888914,1890247-1890460,1890535-1890615,189... 27 5.0
11_01_0257 + 1972111-1972832,1974214-1974427,1974502-1974582,197... 27 5.0
03_03_0094 + 14378953-14380728 27 5.0
03_02_0067 + 5364713-5364936,5365513-5367016,5367207-5368250,536... 27 6.6
02_04_0261 + 21363787-21363891,21364185-21364286,21365854-213659... 27 6.6
09_04_0260 - 16197522-16197669,16198027-16198130,16198508-161987... 27 8.7
03_05_0167 - 21448714-21448846,21449748-21449870,21450024-214503... 27 8.7
>01_03_0032 -
11795368-11795385,11795607-11795670,11795979-11796046,
11796319-11796455,11796722-11796783,11796889-11796956,
11797045-11797126,11798160-11798269
Length = 202
Score = 90.6 bits (215), Expect = 5e-19
Identities = 52/106 (49%), Positives = 70/106 (66%), Gaps = 1/106 (0%)
Frame = +2
Query: 11 IVKCHDHIEIMVNSAGELLFFRHREGPWMPTLRLLHKYPFFLPMQQVDKGAIRFVLSGAN 190
+VKC +H+ ++V + LFF R+ P ++ K+ QVD+GAI+FVLSGAN
Sbjct: 84 VVKCQNHLNLVVVN-NVPLFFNIRDDP-----DIMKKF-------QVDRGAIKFVLSGAN 130
Query: 191 IMCPGLTSPGARMS-SVEKGQVVAVMAEGKEHALAIGTTALSTDDM 325
IMCPGLTSPG + VE+ VA+MAEGK+HALAIG T +S D+
Sbjct: 131 IMCPGLTSPGGSLDVEVEEETPVAIMAEGKQHALAIGYTKMSAKDI 176
>02_04_0233 -
21135743-21135867,21135970-21136340,21136486-21136757,
21137289-21137397,21137846-21138247,21138376-21138419,
21138539-21138759,21140163-21140274,21140620-21140754
Length = 596
Score = 47.2 bits (107), Expect = 6e-06
Identities = 24/71 (33%), Positives = 40/71 (56%), Gaps = 1/71 (1%)
Frame = +2
Query: 113 LHKYPFFLPMQQVDKGAI-RFVLSGANIMCPGLTSPGARMSSVEKGQVVAVMAEGKEHAL 289
L K P LP + G + RF+L GA++M PG++ P + S + GQ +V G +
Sbjct: 96 LWKVPDLLPAFTLKGGEVSRFILGGADLMFPGISIPPEGLPSFQPGQPWSVKVPGNPAPI 155
Query: 290 AIGTTALSTDD 322
A+G T +S+++
Sbjct: 156 AVGATTMSSNE 166
>05_03_0095 - 8349971-8350171,8350659-8351303
Length = 281
Score = 30.7 bits (66), Expect = 0.53
Identities = 16/63 (25%), Positives = 29/63 (46%)
Frame = +2
Query: 131 FLPMQQVDKGAIRFVLSGANIMCPGLTSPGARMSSVEKGQVVAVMAEGKEHALAIGTTAL 310
++P Q+D G +++ + + +TS +S Q + V A G A A+G AL
Sbjct: 113 YIPAGQIDGGRTQYMATSFTVPAFAVTSSATAAASSSPAQTITVPASGPSPA-AVGAVAL 171
Query: 311 STD 319
+
Sbjct: 172 QQE 174
>12_01_0255 +
1888193-1888914,1890247-1890460,1890535-1890615,
1890753-1890842,1890950-1891036,1891553-1891653,
1891966-1892011,1892366-1892440,1892557-1892640,
1892721-1892936,1893216-1893358,1893488-1893629
Length = 666
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +2
Query: 203 GLTSPGARMSSVEKGQVVAVMAEGKEHALAIGTTALSTDDM*DLVR 340
G SPGA M+S EK V +A + G A S DD+ D VR
Sbjct: 101 GEQSPGATMTSAEKLVVARQLARLGVDIIEAGFPASSPDDL-DAVR 145
>11_01_0257 +
1972111-1972832,1974214-1974427,1974502-1974582,
1974720-1974809,1974911-1974997,1975484-1975584,
1975892-1975937,1976272-1976346,1976459-1976542,
1976620-1976861,1977067-1977258,1977391-1977532
Length = 691
Score = 27.5 bits (58), Expect = 5.0
Identities = 19/46 (41%), Positives = 23/46 (50%)
Frame = +2
Query: 203 GLTSPGARMSSVEKGQVVAVMAEGKEHALAIGTTALSTDDM*DLVR 340
G SPGA M+S EK V +A + G A S DD+ D VR
Sbjct: 101 GEQSPGATMTSAEKLVVARQLARLGVDIIEAGFPASSPDDL-DAVR 145
>03_03_0094 + 14378953-14380728
Length = 591
Score = 27.5 bits (58), Expect = 5.0
Identities = 18/56 (32%), Positives = 28/56 (50%)
Frame = +2
Query: 149 VDKGAIRFVLSGANIMCPGLTSPGARMSSVEKGQVVAVMAEGKEHALAIGTTALST 316
V A+ + GA +M PGL + +E G+ V +M K A+AIG ++T
Sbjct: 319 VKDSAVNAICYGAKLMIPGLL---RFENEIEVGEEVVLMTT-KGEAIAIGIAEMTT 370
>03_02_0067 +
5364713-5364936,5365513-5367016,5367207-5368250,
5368467-5368577,5368997-5369068,5369719-5369737,
5369838-5371142,5371317-5371397,5372441-5372604,
5373363-5373466,5373537-5373628,5374079-5374216,
5374370-5374426,5374820-5375046
Length = 1713
Score = 27.1 bits (57), Expect = 6.6
Identities = 11/17 (64%), Positives = 13/17 (76%)
Frame = +3
Query: 87 VLGCRRYVFFINTRSFY 137
VLGC VF INTR+F+
Sbjct: 191 VLGCMSSVFSINTRTFF 207
>02_04_0261 +
21363787-21363891,21364185-21364286,21365854-21365964,
21366233-21366334,21366901-21367016,21367180-21367258,
21367347-21367517,21367617-21367712
Length = 293
Score = 27.1 bits (57), Expect = 6.6
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = -2
Query: 158 LCPPAASVKRTGIYEEDVTSASKDPHGDGRTVIL 57
+C AA ++ G + E S SK P DG+ VIL
Sbjct: 102 VCACAAIKQKGGAFVEAPVSGSKKPAEDGQLVIL 135
>09_04_0260 -
16197522-16197669,16198027-16198130,16198508-16198719,
16198795-16198900,16199006-16199119,16199200-16199417,
16199837-16199900,16199982-16200335,16200609-16200767,
16201486-16202907
Length = 966
Score = 26.6 bits (56), Expect = 8.7
Identities = 9/16 (56%), Positives = 13/16 (81%)
Frame = -1
Query: 174 TKRIAPLSTCCIGKKN 127
+KR+ P S+CC GK+N
Sbjct: 74 SKRLKPSSSCCSGKEN 89
>03_05_0167 - 21448714-21448846,21449748-21449870,21450024-21450302,
21450389-21450672,21450737-21450964,21452937-21453110,
21453198-21453732,21453779-21453840,21453908-21454231,
21454664-21455093,21457033-21457268,21457355-21457414,
21457495-21457628,21457884-21458010,21458239-21458337,
21458414-21458513,21458601-21458671,21459101-21459172,
21459656-21459787,21460512-21460670
Length = 1253
Score = 26.6 bits (56), Expect = 8.7
Identities = 12/26 (46%), Positives = 15/26 (57%)
Frame = +3
Query: 99 RRYVFFINTRSFYRCSRWTKGQFASY 176
RRY F I RS+ CS + FAS+
Sbjct: 1210 RRYFFLITFRSYLYCSSLREPTFASW 1235
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,453,136
Number of Sequences: 37544
Number of extensions: 271406
Number of successful extensions: 659
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 653
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 658
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 823860276
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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