Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D14
         (438 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF045640-2|AAM81123.1|  185|Caenorhabditis elegans Hypothetical ...   140   3e-34
Z66513-15|CAA91337.3|  487|Caenorhabditis elegans Hypothetical p...    27   7.9  
AL110499-6|CAB57915.2|  487|Caenorhabditis elegans Hypothetical ...    27   7.9  

>AF045640-2|AAM81123.1|  185|Caenorhabditis elegans Hypothetical
           protein C11D2.7 protein.
          Length = 185

 Score =  140 bits (340), Expect = 3e-34
 Identities = 62/108 (57%), Positives = 87/108 (80%), Gaps = 1/108 (0%)
 Frame = +2

Query: 5   FRIVKCHDHIEIMVNSAGELLFFRHREGPWMPTLRLLHKYPFFLPMQQVDKGAIRFVLSG 184
           F+++KC DHIE++ +  G + F + R   ++PTLR LHKYPF LP QQVDKGAI+F+L+G
Sbjct: 50  FKVIKCKDHIELLADHLGVVRFVKTRNTDYIPTLRTLHKYPFILPHQQVDKGAIKFILNG 109

Query: 185 ANIMCPGLTSPGARMSS-VEKGQVVAVMAEGKEHALAIGTTALSTDDM 325
           ++IMCPGLTSPGA+++  V K  VVAVMAEGK+HALAIG  ++S++++
Sbjct: 110 SSIMCPGLTSPGAKLTPLVPKDSVVAVMAEGKQHALAIGLMSMSSEEI 157


>Z66513-15|CAA91337.3|  487|Caenorhabditis elegans Hypothetical
           protein F54D5.12 protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 204 PGHIILAPLSTKRIAPLSTCCIGKKNGYL*RRRNVGIQGPS 82
           PG ++L P ST+ ++ +   C   K   + +  N G+ G S
Sbjct: 66  PGSVVLYPKSTEEVSAILAYCSKNKLAVVPQGGNTGLVGGS 106


>AL110499-6|CAB57915.2|  487|Caenorhabditis elegans Hypothetical
           protein F54D5.12 protein.
          Length = 487

 Score = 26.6 bits (56), Expect = 7.9
 Identities = 12/41 (29%), Positives = 21/41 (51%)
 Frame = -1

Query: 204 PGHIILAPLSTKRIAPLSTCCIGKKNGYL*RRRNVGIQGPS 82
           PG ++L P ST+ ++ +   C   K   + +  N G+ G S
Sbjct: 66  PGSVVLYPKSTEEVSAILAYCSKNKLAVVPQGGNTGLVGGS 106


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,612,350
Number of Sequences: 27780
Number of extensions: 226019
Number of successful extensions: 458
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 452
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 457
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 745968860
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)