Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D14
         (438 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly pro...    22   2.6  
AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    22   2.6  
AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.     22   2.6  
AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.      22   3.4  
AY739659-1|AAU85298.1|  288|Apis mellifera hyperpolarization-act...    21   4.5  
AY739658-1|AAU85297.1|  664|Apis mellifera hyperpolarization-act...    21   4.5  
AY280848-1|AAQ16312.1|  632|Apis mellifera hyperpolarization-act...    21   4.5  

>AY398690-1|AAR83734.1|  416|Apis mellifera major royal jelly
           protein 8 protein.
          Length = 416

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 8/18 (44%), Positives = 11/18 (61%)
 Frame = -2

Query: 347 YAIELDLTCRQWTMQSSL 294
           Y IE+D+  R W + S L
Sbjct: 123 YKIEIDMCDRLWVLDSGL 140


>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 369 LFSKVLILRHRTRSYMSSVDNAVV 298
           + S V   RH    Y+S VD  VV
Sbjct: 305 IISSVFTTRHNATCYLSHVDPDVV 328


>AB050744-1|BAB17753.1|  238|Apis mellifera period protein protein.
          Length = 238

 Score = 22.2 bits (45), Expect = 2.6
 Identities = 10/24 (41%), Positives = 12/24 (50%)
 Frame = -1

Query: 369 LFSKVLILRHRTRSYMSSVDNAVV 298
           + S V   RH    Y+S VD  VV
Sbjct: 11  IISSVFTTRHNATCYLSHVDPDVV 34


>AB207270-1|BAE72137.1|  429|Apis mellifera broad-complex protein.
          Length = 429

 Score = 21.8 bits (44), Expect = 3.4
 Identities = 11/26 (42%), Positives = 12/26 (46%)
 Frame = -2

Query: 110 DVTSASKDPHGDGRTVILQHCSPLFR 33
           DVT A          V+L  CSP FR
Sbjct: 33  DVTLACDGRSLKAHRVVLSACSPYFR 58


>AY739659-1|AAU85298.1|  288|Apis mellifera
           hyperpolarization-activated ion channelvariant T
           protein.
          Length = 288

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 210 LHQGRGCRQLRRVKLL 257
           LH GR  R LR  KLL
Sbjct: 199 LHAGRALRILRLAKLL 214


>AY739658-1|AAU85297.1|  664|Apis mellifera
           hyperpolarization-activated ion channelvariant L
           protein.
          Length = 664

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 210 LHQGRGCRQLRRVKLL 257
           LH GR  R LR  KLL
Sbjct: 199 LHAGRALRILRLAKLL 214


>AY280848-1|AAQ16312.1|  632|Apis mellifera
           hyperpolarization-activated ion channel protein.
          Length = 632

 Score = 21.4 bits (43), Expect = 4.5
 Identities = 10/16 (62%), Positives = 10/16 (62%)
 Frame = +3

Query: 210 LHQGRGCRQLRRVKLL 257
           LH GR  R LR  KLL
Sbjct: 199 LHAGRALRILRLAKLL 214


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 130,089
Number of Sequences: 438
Number of extensions: 2830
Number of successful extensions: 10
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11327868
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)