Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D12
         (451 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces pomb...    25   7.1  
SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    25   7.1  
SPBC11C11.10 ||SPBC3B8.13c|pseudouridine synthase|Schizosaccharo...    25   7.1  

>SPBC20F10.02c |||DUF1741 family protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 600

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 9/22 (40%), Positives = 16/22 (72%)
 Frame = -1

Query: 349 IIIRNDKLLIFIYLLMHASSLF 284
           ++IR+D+L+   Y L+H+S  F
Sbjct: 486 LVIRSDELVDLFYKLLHSSKNF 507


>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = -2

Query: 237 LITNDVNINTVFKNYFILMVSCSIV 163
           LITND     +F N F  +V C ++
Sbjct: 333 LITNDPKTTAIFVNIFGGIVRCDVI 357


>SPBC11C11.10 ||SPBC3B8.13c|pseudouridine
           synthase|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 407

 Score = 24.6 bits (51), Expect = 7.1
 Identities = 10/33 (30%), Positives = 20/33 (60%)
 Frame = +1

Query: 133 TIVLFEKINYYNRTRNHQNEIIFKNGIYIHIIC 231
           T V+F++I  +    N +NEI+F   +++  +C
Sbjct: 14  TRVVFQRITKFTAKANEENEILF-YALFVADLC 45


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,447,660
Number of Sequences: 5004
Number of extensions: 25490
Number of successful extensions: 38
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 38
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 38
length of database: 2,362,478
effective HSP length: 67
effective length of database: 2,027,210
effective search space used: 166231220
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)