Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D08
         (451 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

01_07_0009 - 40397276-40397534,40397637-40398745,40398834-403989...    31   0.32 
12_02_0219 + 15822050-15824896                                         29   1.3  
03_05_0517 - 25118232-25118730,25119002-25119273                       28   3.0  
03_02_0269 + 7001891-7002212,7003598-7004037                           28   3.0  
03_02_0721 - 10677286-10678018,10679293-10679373,10682516-106826...    28   4.0  
11_06_0527 + 24672649-24672707,24673459-24673817,24674366-246744...    27   5.3  
11_04_0321 - 16359390-16359539,16359674-16359746,16360448-163608...    27   5.3  

>01_07_0009 -
           40397276-40397534,40397637-40398745,40398834-40398932,
           40399043-40399272,40399534-40399585,40399679-40399865,
           40399987-40400193,40400283-40400449,40400804-40401094,
           40401166-40401636
          Length = 1023

 Score = 31.5 bits (68), Expect = 0.32
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 1/52 (1%)
 Frame = +2

Query: 17  DTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVVLLLRTRILSSLNHQTVLAE 169
           D  R+ ++ C F   P WPWL  T  ++ T+V+ LL   I  +  H+    E
Sbjct: 369 DPSRKHEMHCRFEKKPPWPWLAITS-SFGTLVIALLTGHIFQATVHRIAKVE 419


>12_02_0219 + 15822050-15824896
          Length = 948

 Score = 29.5 bits (63), Expect = 1.3
 Identities = 14/39 (35%), Positives = 23/39 (58%), Gaps = 1/39 (2%)
 Frame = +2

Query: 8   DNSDTIRQ*KLSC-FSSSPYWPWLPQTEFTWWTIVVLLL 121
           D  D +R+ ++ C F+  P WPWL     ++ T+V+ LL
Sbjct: 269 DFGDPLRKHEMHCRFTQGPPWPWLAVAS-SYGTLVISLL 306


>03_05_0517 - 25118232-25118730,25119002-25119273
          Length = 256

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 12/37 (32%), Positives = 16/37 (43%)
 Frame = +1

Query: 130 DPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 240
           D FF++    P GN     T P  VD   P  P + +
Sbjct: 37  DWFFTRKGESPQGNISKEETAPTGVDVTDPGRPGRAF 73


>03_02_0269 + 7001891-7002212,7003598-7004037
          Length = 253

 Score = 28.3 bits (60), Expect = 3.0
 Identities = 9/22 (40%), Positives = 14/22 (63%)
 Frame = -1

Query: 265 SHHGREGCRIAWVDNWDD*NRR 200
           + H R+  R+AW D W D +R+
Sbjct: 62  TEHARQRMRVAWADGWVDGSRK 83


>03_02_0721 -
           10677286-10678018,10679293-10679373,10682516-10682645,
           10682969-10683101
          Length = 358

 Score = 27.9 bits (59), Expect = 4.0
 Identities = 13/30 (43%), Positives = 17/30 (56%)
 Frame = +1

Query: 106 SGVVIANPDPFFSQPSNGPSGNYEPISTGP 195
           SG V+ +P+   SQP+NG SG       GP
Sbjct: 218 SGSVVVDPEEPSSQPNNGSSGGGGGTPDGP 247


>11_06_0527 +
           24672649-24672707,24673459-24673817,24674366-24674435,
           24674656-24674730,24674731-24674846,24674975-24675006,
           24675117-24675242,24675379-24675537,24675886-24675978,
           24676069-24676236,24676388-24676486,24676603-24676820,
           24676900-24676957,24677421-24677509,24677590-24677721,
           24678000-24678122,24678568-24678666,24678774-24678965,
           24679127-24679298,24679416-24679572,24679704-24679906,
           24680105-24680246,24680324-24680484,24680585-24680701,
           24680788-24680874
          Length = 1101

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 18/53 (33%), Positives = 33/53 (62%), Gaps = 6/53 (11%)
 Frame = -2

Query: 228 WIIGM----IEIDER-RSSAYGFIISARTV*WLREER-IRVRNNNTTIVHHVN 88
           W+ G+    ++++++ R S  G  + +  V W R +R I+ +NN+TTIV HV+
Sbjct: 265 WLEGLASEALDLEKKVRGSHVGSYLPSSGV-WHRTQRYIKRKNNDTTIVKHVD 316


>11_04_0321 -
           16359390-16359539,16359674-16359746,16360448-16360845,
           16360919-16362673,16362751-16362861,16363745-16363962,
           16364088-16364196
          Length = 937

 Score = 27.5 bits (58), Expect = 5.3
 Identities = 9/15 (60%), Positives = 11/15 (73%)
 Frame = +1

Query: 223 YPPKRYDNPLARGGK 267
           YPPKRY NP+   G+
Sbjct: 859 YPPKRYSNPVGPAGR 873


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,721,083
Number of Sequences: 37544
Number of extensions: 199162
Number of successful extensions: 497
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 487
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 497
length of database: 14,793,348
effective HSP length: 76
effective length of database: 11,940,004
effective search space used: 871620292
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)