Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_D08
(451 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical pr... 29 1.6
Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical pr... 28 2.7
AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical ... 28 3.6
Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical pr... 27 4.8
U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1... 27 6.3
U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1... 27 6.3
U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1... 27 6.3
AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR... 27 6.3
AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein. 27 6.3
AC006714-7|AAK29718.3| 612|Caenorhabditis elegans Hypothetical ... 27 6.3
U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical pr... 27 8.3
AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical... 27 8.3
AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical... 27 8.3
>Z70756-7|CAA94794.2| 199|Caenorhabditis elegans Hypothetical
protein T06E4.8 protein.
Length = 199
Score = 29.1 bits (62), Expect = 1.6
Identities = 15/39 (38%), Positives = 17/39 (43%)
Frame = +1
Query: 115 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 231
V A P P F+ P+ P PI GPAF P P
Sbjct: 110 VFAAPRPVFASPALAPVAPMAPILRGPAFAYAPSPVLAP 148
>Z70756-8|CAA94795.2| 212|Caenorhabditis elegans Hypothetical
protein T06E4.9 protein.
Length = 212
Score = 28.3 bits (60), Expect = 2.7
Identities = 14/39 (35%), Positives = 17/39 (43%)
Frame = +1
Query: 115 VIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPP 231
V A P P F+ P+ P P+ GPAF P P
Sbjct: 123 VFAAPRPVFAAPALAPVAPMAPVLRGPAFAYAPSPVLAP 161
>AF003389-1|AAC71138.2| 865|Caenorhabditis elegans Hypothetical
protein F23H11.2 protein.
Length = 865
Score = 27.9 bits (59), Expect = 3.6
Identities = 11/50 (22%), Positives = 29/50 (58%)
Frame = -2
Query: 249 RVVVSLGWIIGMIEIDERRSSAYGFIISARTV*WLREERIRVRNNNTTIV 100
+++++L ++ ++ SS Y I+++ V W+RE+R R+ + ++
Sbjct: 288 QLILNLEMLVAILH-SALMSSGYQTILTSDVVRWIREDRFRISRRSIRLI 336
>Z81564-5|CAB04569.1| 656|Caenorhabditis elegans Hypothetical
protein K05C4.5 protein.
Length = 656
Score = 27.5 bits (58), Expect = 4.8
Identities = 15/35 (42%), Positives = 21/35 (60%), Gaps = 2/35 (5%)
Frame = +1
Query: 100 DNSGVVIANPDPFFSQPSNGPSGNYEPIS--TGPA 198
DNS + IA DP ++ +GNYE ++ TGPA
Sbjct: 214 DNSTLNIAGVDPRITELRETRNGNYEIVNRRTGPA 248
>U39997-6|AAN60517.1| 942|Caenorhabditis elegans Clear protein 1,
isoform c protein.
Length = 942
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 374 FFVFVVINKVQIKFSFLEHITKKKKK 451
+ +FV N Q+ F F EH T K+K+
Sbjct: 342 YTLFVSGNNGQVPFEFTEHFTTKQKR 367
>U39997-5|AAN60515.1| 1409|Caenorhabditis elegans Clear protein 1,
isoform a protein.
Length = 1409
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 374 FFVFVVINKVQIKFSFLEHITKKKKK 451
+ +FV N Q+ F F EH T K+K+
Sbjct: 342 YTLFVSGNNGQVPFEFTEHFTTKQKR 367
>U39997-4|AAN60516.1| 1444|Caenorhabditis elegans Clear protein 1,
isoform b protein.
Length = 1444
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 374 FFVFVVINKVQIKFSFLEHITKKKKK 451
+ +FV N Q+ F F EH T K+K+
Sbjct: 377 YTLFVSGNNGQVPFEFTEHFTTKQKR 402
>AF047881-1|AAC27552.1| 942|Caenorhabditis elegans truncated CLR-1
protein.
Length = 942
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 374 FFVFVVINKVQIKFSFLEHITKKKKK 451
+ +FV N Q+ F F EH T K+K+
Sbjct: 342 YTLFVSGNNGQVPFEFTEHFTTKQKR 367
>AF047880-1|AAC27551.1| 1409|Caenorhabditis elegans CLR-1 protein.
Length = 1409
Score = 27.1 bits (57), Expect = 6.3
Identities = 11/26 (42%), Positives = 16/26 (61%)
Frame = +2
Query: 374 FFVFVVINKVQIKFSFLEHITKKKKK 451
+ +FV N Q+ F F EH T K+K+
Sbjct: 342 YTLFVSGNNGQVPFEFTEHFTTKQKR 367
>AC006714-7|AAK29718.3| 612|Caenorhabditis elegans Hypothetical
protein Y119D3B.11 protein.
Length = 612
Score = 27.1 bits (57), Expect = 6.3
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 445 FFFCNMFQKRKFYLNFV 395
F FC+M Q+R+F+ NFV
Sbjct: 31 FEFCSMEQERRFFKNFV 47
>U39993-1|AAA81086.1| 594|Caenorhabditis elegans Hypothetical
protein F47E1.3 protein.
Length = 594
Score = 26.6 bits (56), Expect = 8.3
Identities = 14/45 (31%), Positives = 18/45 (40%), Gaps = 2/45 (4%)
Frame = +1
Query: 124 NPDPFFSQP--SNGPSGNYEPISTGPAFVDFNHPNYPPKRYDNPL 252
+P PF + P SN S P F + PP R +PL
Sbjct: 90 SPPPFMTSPATSNNSVSVARKTSAPPGFAQYEPDTAPPSRSTSPL 134
>AF003141-14|AAM48549.1| 362|Caenorhabditis elegans Hypothetical
protein W02D3.11b protein.
Length = 362
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 127 PDPFFSQPSNGPSGNYEPIS 186
P PF S P P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238
>AF003141-13|AAK21490.1| 549|Caenorhabditis elegans Hypothetical
protein W02D3.11a protein.
Length = 549
Score = 26.6 bits (56), Expect = 8.3
Identities = 10/20 (50%), Positives = 11/20 (55%)
Frame = +1
Query: 127 PDPFFSQPSNGPSGNYEPIS 186
P PF S P P G Y+P S
Sbjct: 219 PPPFASAPQTAPRGAYDPYS 238
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,473,671
Number of Sequences: 27780
Number of extensions: 181464
Number of successful extensions: 577
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 548
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 577
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 788595652
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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