Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D08
         (451 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    25   0.38 
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   3.6  
DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated...    21   6.2  

>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 25.0 bits (52), Expect = 0.38
 Identities = 11/29 (37%), Positives = 17/29 (58%)
 Frame = +2

Query: 53  SSPYWPWLPQTEFTWWTIVVLLLRTRILS 139
           S+P W + P   FTW  I V++L   +L+
Sbjct: 549 SAPVWRFQPWGPFTWGGIGVVVLFAVVLA 577


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 21.8 bits (44), Expect = 3.6
 Identities = 12/49 (24%), Positives = 23/49 (46%)
 Frame = +1

Query: 94  VVDNSGVVIANPDPFFSQPSNGPSGNYEPISTGPAFVDFNHPNYPPKRY 240
           + DNS   ++  DP+F + ++        ++     +D NHP +  K Y
Sbjct: 162 LADNS---VSIKDPWFPRHASDLDNCNHLMTKFEPDLDMNHPGFADKEY 207


>DQ667193-1|ABG75745.1|  510|Apis mellifera cys-loop ligand-gated
           ion channel subunit protein.
          Length = 510

 Score = 21.0 bits (42), Expect = 6.2
 Identities = 11/31 (35%), Positives = 14/31 (45%)
 Frame = +3

Query: 3   RQTTLTLFDNESFRVFLLRRIGHGCRKQSSR 95
           RQ    L  +ESFR    R     CRK+  +
Sbjct: 427 RQFLYCLAGDESFRKRRQREAAGNCRKRGEK 457


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 116,153
Number of Sequences: 438
Number of extensions: 2514
Number of successful extensions: 3
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 3
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 3
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11820384
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)