Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D06
         (637 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9 methylt...    27   0.20 
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    24   1.4  
DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related pro...    23   3.3  
AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.        22   5.7  

>AM050259-1|CAJ18340.1|  683|Apis mellifera putative H3K9
           methyltransferase protein.
          Length = 683

 Score = 26.6 bits (56), Expect = 0.20
 Identities = 14/54 (25%), Positives = 25/54 (46%)
 Frame = +2

Query: 257 GYGPTAGSALAHHPDVDXVAFTGSTEVGRIILGAAATVNLKRVTLELGGKSPLV 418
           G G T G    +  D+  +  +  T + R ++   AT+N+  +     GKS +V
Sbjct: 6   GLGVTTGQPNLYKQDLSKLDVSKLTALSREVISRQATINIGTIGHVAHGKSTIV 59


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 23.8 bits (49), Expect = 1.4
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = +1

Query: 205 CPCQGMWLPGWCCQRSSRIWP 267
           C C   WLPG   Q S+R +P
Sbjct: 684 CNCSMDWLPGINNQTSTREYP 704


>DQ015969-1|AAY81926.1|  397|Apis mellifera stargazin related
           protein STG-1 protein.
          Length = 397

 Score = 22.6 bits (46), Expect = 3.3
 Identities = 19/52 (36%), Positives = 22/52 (42%)
 Frame = +2

Query: 104 IPMMVWKIAPALAAGCTVVLKPAEQTPLTXXXXXXXXKECGFPAGVVNVVPG 259
           IP  V K A    A  T +L  AE    T        + C F AGVV +V G
Sbjct: 140 IPYAVTKSAMFFFAA-TSLLVVAEVCYFTAHVTHPRHRLCVFVAGVVFIVSG 190


>AY703685-1|AAU12681.1|  200|Apis mellifera abdominal-A protein.
          Length = 200

 Score = 21.8 bits (44), Expect = 5.7
 Identities = 8/15 (53%), Positives = 12/15 (80%)
 Frame = +2

Query: 245 NVVPGYGPTAGSALA 289
           ++VPG+G TA S+ A
Sbjct: 117 SMVPGFGSTAASSAA 131


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 181,883
Number of Sequences: 438
Number of extensions: 3911
Number of successful extensions: 10
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 10
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 19071468
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)