Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_D05
(659 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC29A10.10c |||tRNA-splicing endonuclease positive effector |S... 28 1.4
SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non ca... 28 1.4
SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces pom... 26 4.2
SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase Ub... 25 7.3
SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr... 25 7.3
SPAC1687.20c |mis6||inner centromere protein Mis6|Schizosaccharo... 25 7.3
SPCC1739.11c |cdc11||SIN component scaffold protein Cdc11|Schizo... 25 7.3
SPAC23H3.08c |bub3||mitotic spindle checkpoint protein Bub3|Schi... 25 9.7
SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr 1|||Ma... 25 9.7
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac... 25 9.7
SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces... 25 9.7
>SPBC29A10.10c |||tRNA-splicing endonuclease positive effector
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1944
Score = 27.9 bits (59), Expect = 1.4
Identities = 24/61 (39%), Positives = 31/61 (50%), Gaps = 3/61 (4%)
Frame = -2
Query: 175 VRASLSDSDVI*VLTDCCRMAV---RAYAHAPRVTNSHTLMNFILFYVRINDVRKRHVYR 5
VR+S+S I L D R+ V RA + V NS LM +FY I D + R V+R
Sbjct: 1721 VRSSMSGG--IGFLQDLRRLNVALTRAKSSLYIVGNSKPLMQEDIFYSLIEDAKTRGVWR 1778
Query: 4 D 2
D
Sbjct: 1779 D 1779
>SPBC1215.02c |arm1|mdm20|NatB N-acetyltransferase complex non
catalytic subunit Arm1|Schizosaccharomyces pombe|chr
2|||Manual
Length = 811
Score = 27.9 bits (59), Expect = 1.4
Identities = 17/63 (26%), Positives = 29/63 (46%), Gaps = 3/63 (4%)
Frame = -3
Query: 372 RSSNVYPMIDCSFYPMSSLELYRNLLCRTSQSLSIGLR---LVQNSESAKFRHQLDDQRW 202
R++ YP S Y SSL++Y + T + +S+ Q + FR +LD W
Sbjct: 480 RATTYYPSSVTSHYINSSLKIYGSNEFETPEMISMAYEDGAYSQIEDMRNFRSRLDHSTW 539
Query: 201 RML 193
+ +
Sbjct: 540 KSI 542
>SPBPJ4664.05 |||conserved fungal protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 163
Score = 26.2 bits (55), Expect = 4.2
Identities = 21/60 (35%), Positives = 31/60 (51%), Gaps = 1/60 (1%)
Frame = -3
Query: 405 PLPLHPD*SRFRSSNVYPMIDCSFY-PMSSLELYRNLLCRTSQSLSIGLRLVQNSESAKF 229
PLPL+ D S VY +ID F+ P SL + +LL S ++S L + + + KF
Sbjct: 56 PLPLNFDISVHLMPTVYTLIDYLFFSPPFSLSIGPSLLVYLSIAVSYMLWVEKCYQMNKF 115
>SPBC713.02c |ubp21|ubpD, ubp15|ubiquitin C-terminal hydrolase
Ubp21|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1129
Score = 25.4 bits (53), Expect = 7.3
Identities = 13/42 (30%), Positives = 19/42 (45%)
Frame = +3
Query: 276 DFGKFYKGDSYIILKTTSDKRNNLSWDIHYWIGSETSQDEAG 401
D F D +L TT KRN WD+ + ++D +G
Sbjct: 606 DMTDFSASDDDPVLITTKIKRNANIWDLQKHLAGLLNRDTSG 647
>SPBC29A3.13 |||PWWP domain protein|Schizosaccharomyces pombe|chr
2|||Manual
Length = 359
Score = 25.4 bits (53), Expect = 7.3
Identities = 19/80 (23%), Positives = 34/80 (42%), Gaps = 4/80 (5%)
Frame = -1
Query: 629 LSHSNIPLAFNLEHTF----LGTRIRHDVVETGRVTPIQVL*CRCEVL*EVVTLVAHSLA 462
LS PL+ N +H G + + E GR++P L + + L + + H L
Sbjct: 214 LSDQRYPLSSNFDHRGEAKGKGKQPLKNPQERGRISPSSPLNDQTKALMQRLLFFRHKLQ 273
Query: 461 VLYRRSTELVIEADSQDGSR 402
+ L++E D + S+
Sbjct: 274 KAFLSPDHLIVEEDFYNASK 293
>SPAC1687.20c |mis6||inner centromere protein
Mis6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 672
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +1
Query: 115 PYGSNLLILKSHHYRIR 165
PY SNLL+L + HY ++
Sbjct: 148 PYISNLLVLLTKHYHVK 164
>SPCC1739.11c |cdc11||SIN component scaffold protein
Cdc11|Schizosaccharomyces pombe|chr 3|||Manual
Length = 1045
Score = 25.4 bits (53), Expect = 7.3
Identities = 9/20 (45%), Positives = 14/20 (70%)
Frame = -3
Query: 363 NVYPMIDCSFYPMSSLELYR 304
N+YP+ID S Y +S+ Y+
Sbjct: 954 NIYPVIDDSIYELSAASKYQ 973
>SPAC23H3.08c |bub3||mitotic spindle checkpoint protein
Bub3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 320
Score = 25.0 bits (52), Expect = 9.7
Identities = 17/64 (26%), Positives = 28/64 (43%), Gaps = 2/64 (3%)
Frame = +3
Query: 174 TKARVHPAFANAGRQAGVEIWRIQNFEPVAVQSKDFGK--FYKGDSYIILKTTSDKRNNL 347
+K R+ F + +W ++ +PV + +D GK F IL +R NL
Sbjct: 102 SKLRLENCFISGSWDKSFRVWDVRVKQPV--EGQDIGKKIFASSSRDNILVLGCSERENL 159
Query: 348 SWDI 359
+DI
Sbjct: 160 VYDI 163
>SPAC12B10.13 |||CTLH domain|Schizosaccharomyces pombe|chr
1|||Manual
Length = 240
Score = 25.0 bits (52), Expect = 9.7
Identities = 15/43 (34%), Positives = 22/43 (51%)
Frame = -3
Query: 375 FRSSNVYPMIDCSFYPMSSLELYRNLLCRTSQSLSIGLRLVQN 247
F N+ P+ + ++SLEL +LLC S S L+ V N
Sbjct: 140 FAHENLAPLAPSNQKFLNSLELTMSLLCFPPSSYSPALKNVLN 182
>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
complex subunit, Fip1 homolog |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 344
Score = 25.0 bits (52), Expect = 9.7
Identities = 10/20 (50%), Positives = 12/20 (60%)
Frame = -3
Query: 615 HSSCL*PGTYVSRHPDSSRR 556
HS P YV+ +P SSRR
Sbjct: 242 HSGAATPNAYVNNNPSSSRR 261
>SPAC6F6.06c |rax2||cell polarity factor Rax2|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1155
Score = 25.0 bits (52), Expect = 9.7
Identities = 11/38 (28%), Positives = 21/38 (55%)
Frame = +1
Query: 421 SASMTSSVERRYNTARLWATRVTTSYSTSHLHYNTWMG 534
+ ++S + N L ++ + TSYS S + Y++W G
Sbjct: 48 NTDLSSQFFEQTNNGSL-SSLIDTSYSNSQICYSSWQG 84
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,985,378
Number of Sequences: 5004
Number of extensions: 64139
Number of successful extensions: 228
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 220
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 228
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 299817502
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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