Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D04
         (604 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       74   1e-15
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   9.3  
AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase prot...    21   9.3  

>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 73.7 bits (173), Expect = 1e-15
 Identities = 30/89 (33%), Positives = 56/89 (62%)
 Frame = +1

Query: 115 DTLSIAQAVIFCNTRRKVDWLTESMHERDFTVSAMHGDMDQREREVIMRQFRTGSSRVLI 294
           D+ ++   ++F   ++K D++   + E ++  +++HGD  QR+RE  +  F++G   +L+
Sbjct: 447 DSGTLGGTLVFVEMKKKADFIAVFLSENNYPTTSIHGDRLQRQREEALADFKSGRMSILV 506

Query: 295 TTDLLARGIDVQQVSCVINYDLPTNRENY 381
            T + ARG+D++ VS VINYDLP   + Y
Sbjct: 507 ATAVAARGLDIKNVSHVINYDLPKGIDEY 535


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 8/27 (29%), Positives = 12/27 (44%)
 Frame = -3

Query: 197 RSCIDSVSQSTLRRVLQKITACAIESV 117
           R C+D+          QK + C I+ V
Sbjct: 99  RQCVDNAKNEDKCLTAQKFSRCVIDYV 125


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 7/12 (58%), Positives = 10/12 (83%)
 Frame = +2

Query: 35  LHWKVLNNSTLP 70
           LHW++ +NST P
Sbjct: 301 LHWQLPHNSTNP 312


>AY242387-1|AAO72539.2|  693|Apis mellifera prophenoloxidase
           protein.
          Length = 693

 Score = 21.0 bits (42), Expect = 9.3
 Identities = 6/10 (60%), Positives = 6/10 (60%)
 Frame = -1

Query: 526 GWPHHWAFPK 497
           GWP H   PK
Sbjct: 582 GWPQHMLIPK 591


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 171,936
Number of Sequences: 438
Number of extensions: 3542
Number of successful extensions: 6
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17726685
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)