Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D01
         (369 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr...    27   1.2  
SPAC1952.15c |rec24|mug6|meiotic recombination protein Rec24|Sch...    25   3.7  
SPBC16A3.13 |meu7|aah4|alpha-amylase homolog Aah4|Schizosaccharo...    24   6.5  
SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    24   6.5  
SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr...    24   6.5  
SPAC2G11.11c |prh1||ATP-dependent RNA helicase Prh1|Schizosaccha...    24   6.5  
SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces pom...    24   6.5  
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ...    24   6.5  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    24   8.6  
SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence orphan|Schizo...    24   8.6  
SPAC16A10.03c |||zinc finger protein Pep5/Vps11 |Schizosaccharom...    24   8.6  
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz...    24   8.6  
SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr 1|||Ma...    24   8.6  

>SPBC887.02 |||ClC chloride channel|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 667

 Score = 26.6 bits (56), Expect = 1.2
 Identities = 9/23 (39%), Positives = 13/23 (56%)
 Frame = -2

Query: 188 WKDDLTYLGLLTCVMNWSYKDVM 120
           W  D+ YL  ++    WSYKD +
Sbjct: 271 WHTDVGYLSYVSLDRRWSYKDTL 293


>SPAC1952.15c |rec24|mug6|meiotic recombination protein
           Rec24|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 350

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 10/20 (50%), Positives = 13/20 (65%)
 Frame = -1

Query: 348 TQCP*DSPSIREIYMRTFFT 289
           T C  D+PSIR +Y   FF+
Sbjct: 263 TYCKNDNPSIRLLYSECFFS 282


>SPBC16A3.13 |meu7|aah4|alpha-amylase homolog
           Aah4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 774

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 9/20 (45%), Positives = 11/20 (55%)
 Frame = -3

Query: 292 HRRHEVHRRASIQKGLMDYV 233
           H  H VH R S +  L DY+
Sbjct: 427 HEDHSVHERPSAKGALEDYI 446


>SPAC26F1.11 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 105

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/20 (65%), Positives = 15/20 (75%)
 Frame = +2

Query: 275 NFMSSVKKVRI*ISRIEGES 334
           N +S+VKKV    SRIEGES
Sbjct: 67  NTISAVKKVITTESRIEGES 86


>SPBC29A3.01 |||heavy metal ATPase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 904

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 11/19 (57%), Positives = 12/19 (63%)
 Frame = -3

Query: 139 GRTKTSCLMSSDDMLENVE 83
           G T TSC+ S   MLE VE
Sbjct: 10  GMTCTSCVASIQSMLEGVE 28


>SPAC2G11.11c |prh1||ATP-dependent RNA helicase
           Prh1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 719

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 10/30 (33%), Positives = 16/30 (53%)
 Frame = +2

Query: 215 YHLMVLDIVHKSFLYTCTSVNFMSSVKKVR 304
           YH ++LD  H+  L T   + F+  + K R
Sbjct: 210 YHTLILDEAHERTLMTDMLLGFVKKIIKKR 239


>SPCC364.05 |vps3||GTPase regulator Vps3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 910

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 13/33 (39%), Positives = 19/33 (57%)
 Frame = +3

Query: 27  FQKMLVYLFDYLNINQKEVSTFSSMSSELIKHD 125
           F   L+ + +YL +N  E STF   ++ L KHD
Sbjct: 590 FNDGLIKIREYL-VNDIEPSTFWEFTTWLCKHD 621


>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
           Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 775

 Score = 24.2 bits (50), Expect = 6.5
 Identities = 14/76 (18%), Positives = 35/76 (46%)
 Frame = +3

Query: 33  KMLVYLFDYLNINQKEVSTFSSMSSELIKHDVFVRPVHHTCQESKVREVIFPFITISGHV 212
           K +  +F    +  ++++   ++    +  ++ VR  + TC   K+++  +P++  S   
Sbjct: 359 KDISLIFPDFKLVLQQLADSHALDPGRVVSEIHVRHAYRTCTADKMKKADYPYLIHSDGN 418

Query: 213 HII*WC*T*SISPFCI 260
            I   C   S+SP  +
Sbjct: 419 IIQIDCQIISVSPHSV 434


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/46 (26%), Positives = 21/46 (45%)
 Frame = +1

Query: 79  RFLHSQACHQSSSSMTSLYDQFITHVKSPRYVRSSFHSLPYQDMSI 216
           RF H+     S   +    DQ +TH +   Y   ++ SLP+  + +
Sbjct: 438 RFTHASPNRSSCVVLMDELDQLVTHNQKVLYNFFNWPSLPHSRLIV 483


>SPBPB21E7.05 ||SPAPB21E7.05, SPAPB21E7.05|sequence
           orphan|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 127

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/30 (40%), Positives = 17/30 (56%), Gaps = 1/30 (3%)
 Frame = +2

Query: 8   LLCFFVLSKNASVFI*LFKYKSKRG-FYIL 94
           +L FFV   N  +    FK K +RG FY++
Sbjct: 17  ILTFFVYEWNHDITCLNFKVKKRRGDFYVI 46


>SPAC16A10.03c |||zinc finger protein Pep5/Vps11
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 860

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/20 (45%), Positives = 12/20 (60%)
 Frame = -2

Query: 296 SSQTT*SSPTCKYTERTYGL 237
           S +T  +SP C Y  R YG+
Sbjct: 117 SKKTNSNSPLCLYEHRLYGI 136


>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1273

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 97  ACHQSSSSMTSLYDQFITHVKSPRYVRSSFHSLPYQDMS 213
           A H SS  + S+Y   ++H  +P   R+    +P Q +S
Sbjct: 256 ASHLSSQQLLSMYRDQVSHGVTPSTFRNHESFMPTQLVS 294


>SPAPB24D3.03 |||agmatinase |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 385

 Score = 23.8 bits (49), Expect = 8.6
 Identities = 9/16 (56%), Positives = 10/16 (62%)
 Frame = -3

Query: 352 FDTMPLGFPFDTGNLY 305
           FD   +G PFDTG  Y
Sbjct: 62  FDIAFIGMPFDTGTSY 77


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,619,597
Number of Sequences: 5004
Number of extensions: 32867
Number of successful extensions: 95
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 95
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 95
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 116121426
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)