Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_D01
         (369 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371           29   1.5  
07_01_1085 + 9890369-9892114,9892213-9892731                           28   2.6  
06_03_0471 + 21130839-21130869,21131013-21131127,21132228-211323...    27   4.6  
04_03_0795 - 19704354-19704464,19705152-19705214,19705298-197053...    27   6.1  
11_03_0146 + 10744403-10744603,10745199-10745834,10745967-107461...    26   8.1  
07_01_0457 - 3468419-3468585,3469674-3469842,3470339-3470384,347...    26   8.1  

>07_01_1076 + 9649003-9650226,9653318-9653743,9653853-9654371
          Length = 722

 Score = 28.7 bits (61), Expect = 1.5
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 91  SQACHQSSSSMTSLYDQFITHVKSPRYVRSSFHSLPYQDMSISFDGVRH 237
           S+ CH  +   T L D         RYVRS+  +L Y    I  D  RH
Sbjct: 480 SKPCHGMNLISTELEDYLYNPCTGYRYVRSTREALVYIPNRIPSDRFRH 528


>07_01_1085 + 9890369-9892114,9892213-9892731
          Length = 754

 Score = 27.9 bits (59), Expect = 2.6
 Identities = 17/49 (34%), Positives = 21/49 (42%)
 Frame = +1

Query: 91  SQACHQSSSSMTSLYDQFITHVKSPRYVRSSFHSLPYQDMSISFDGVRH 237
           S+ CH  +   T L D         RYVRS+  +L Y    I  D  RH
Sbjct: 512 SKPCHGMNLISTELEDYLYNPCTGYRYVRSTRGALVYIPNRIPSDRFRH 560


>06_03_0471 +
           21130839-21130869,21131013-21131127,21132228-21132309,
           21132444-21132648,21133237-21133296,21133420-21133472,
           21133589-21133711,21133844-21133913,21134012-21134090,
           21134172-21134253,21134272-21134310
          Length = 312

 Score = 27.1 bits (57), Expect = 4.6
 Identities = 12/25 (48%), Positives = 16/25 (64%), Gaps = 1/25 (4%)
 Frame = -3

Query: 367 RWSVCFDTMPLGFPFDTGNL-YAYF 296
           +WSV  DT P+G  FD  N+ + YF
Sbjct: 160 QWSVVGDTFPVGCAFDECNVHFKYF 184


>04_03_0795 -
           19704354-19704464,19705152-19705214,19705298-19705378,
           19705468-19705623,19705711-19705785,19706477-19706587,
           19707206-19707304,19707453-19707546,19707779-19707838,
           19709262-19709334,19711448-19711490,19711533-19711606,
           19711985-19712075,19712170-19712214,19712533-19712589,
           19713440-19713544,19713817-19713932,19714625-19714634,
           19714810-19714920,19715502-19715594,19715664-19715690,
           19715736-19715798,19716326-19716451,19716812-19716949,
           19717164-19717832,19717949-19718123,19718269-19718450
          Length = 1015

 Score = 26.6 bits (56), Expect = 6.1
 Identities = 12/37 (32%), Positives = 22/37 (59%)
 Frame = +3

Query: 3   RVYYVFLYFQKMLVYLFDYLNINQKEVSTFSSMSSEL 113
           ++ + F   QK L  +   LN+NQ+ +S FS ++ +L
Sbjct: 497 QIKHGFSKIQKNLHDMIKVLNLNQESISVFSVITDDL 533


>11_03_0146 +
           10744403-10744603,10745199-10745834,10745967-10746125,
           10746398-10747036,10748018-10748151,10748281-10748464,
           10748882-10749217,10751659-10751945,10752863-10753253,
           10753351-10753615,10753740-10753818,10754123-10754543
          Length = 1243

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 11/36 (30%), Positives = 16/36 (44%)
 Frame = +1

Query: 94  QACHQSSSSMTSLYDQFITHVKSPRYVRSSFHSLPY 201
           Q  H   +   S +DQ   H  +P +V  S   +PY
Sbjct: 421 QQQHHGCNGSPSAFDQHTIHPNAPTHVSPSMEIVPY 456


>07_01_0457 -
           3468419-3468585,3469674-3469842,3470339-3470384,
           3470671-3470753,3471395-3471474,3472320-3472428,
           3472667-3472735,3472874-3472924,3473059-3473184,
           3473312-3473435,3473617-3473672,3473790-3473854,
           3474438-3474513,3475050-3475108,3475275-3475365,
           3475490-3475990
          Length = 623

 Score = 26.2 bits (55), Expect = 8.1
 Identities = 14/48 (29%), Positives = 22/48 (45%)
 Frame = +1

Query: 82  FLHSQACHQSSSSMTSLYDQFITHVKSPRYVRSSFHSLPYQDMSISFD 225
           F H Q C +   S+   YD F  H+     + S+  +LP    ++ FD
Sbjct: 163 FTHCQNCDELKGSVVVGYDAFKAHLAQAALL-SADAALPSVSTAVGFD 209


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,761,448
Number of Sequences: 37544
Number of extensions: 188742
Number of successful extensions: 407
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 400
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 407
length of database: 14,793,348
effective HSP length: 74
effective length of database: 12,015,092
effective search space used: 576724416
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)