Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C24
         (367 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces po...    29   0.30 
SPCC1235.09 |||histone deacetylase complex subunit|Schizosacchar...    25   3.7  
SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomy...    25   4.9  
SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces pombe...    24   6.4  
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni...    24   8.5  
SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces p...    24   8.5  
SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3 |Schizos...    24   8.5  
SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomy...    24   8.5  

>SPBC1861.04c |||RNA-binding protein Prp24|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 1014

 Score = 28.7 bits (61), Expect = 0.30
 Identities = 12/36 (33%), Positives = 18/36 (50%)
 Frame = +1

Query: 199 ILQLSSAMILMDSFYQLLMKFIHNSSLIWTLYLRFI 306
           ++ L+ A  L +  YQ        S  +WTLYL F+
Sbjct: 143 VITLTDAHSLFERAYQTCKFHFSKSQCVWTLYLEFL 178


>SPCC1235.09 |||histone deacetylase complex
           subunit|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 564

 Score = 25.0 bits (52), Expect = 3.7
 Identities = 11/22 (50%), Positives = 15/22 (68%), Gaps = 1/22 (4%)
 Frame = +3

Query: 171 NEGQFL-YAYYIAVIQRNDTHG 233
           N G FL YA++  VI+  D+HG
Sbjct: 274 NSGSFLAYAFFSGVIEIYDSHG 295


>SPAC1687.16c |erg3||C-5 sterol desaturase Erg3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 300

 Score = 24.6 bits (51), Expect = 4.9
 Identities = 24/119 (20%), Positives = 48/119 (40%), Gaps = 12/119 (10%)
 Frame = +3

Query: 33  YLPKYYEFSIFYQKLREEAIALF----HLFYYAKDFETFYKSA------AFARVHLNEGQ 182
           +L + + +S  Y  + +  +  F     LF    DF  ++          + R+H    +
Sbjct: 96  FLAELHGYSYLYDNISDYGLKYFLCSLPLFVMFSDFGIYWAHRFLHHRYVYPRLHKLHHK 155

Query: 183 FLYAYYIAVIQRNDTHGFVLPAPYEVYPQFF-VNMDTLLKIYR-TKMQDGILHDAKAIN 353
           ++     A        GF+   PY ++P FF ++  T L ++        ++HD K I+
Sbjct: 156 WIICTPYASHAFKSADGFLQSLPYHLFPFFFPLHKLTYLALFTFVNFWSIMIHDGKYIS 214


>SPBC3D6.10 |apn2||AP-endonuclease Apn2|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 523

 Score = 24.2 bits (50), Expect = 6.4
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = -3

Query: 203 NIICVQELSLI*VHTSESGTLVEGFKVFSIVEQVEKSNS 87
           ++ICVQEL +      +   +VEGF  +    ++ K  S
Sbjct: 36  DVICVQELKMQKDSFPQQYAVVEGFDSYFTFPKIRKGYS 74


>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
           Orc1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 707

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/39 (30%), Positives = 20/39 (51%)
 Frame = +1

Query: 178 DSSCTHIILQLSSAMILMDSFYQLLMKFIHNSSLIWTLY 294
           D+  TH     SS ++LMD   QL+    HN  +++  +
Sbjct: 436 DNRFTHASPNRSSCVVLMDELDQLV---THNQKVLYNFF 471


>SPAC607.10 |spo3||sporulation protein Spo3|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 1028

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 17/46 (36%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +3

Query: 78  REEAIALFHLF----YYAKDFETFYKSAAFARVHLNEGQFLYAYYI 203
           REEA   FH      Y A +   F  + + A VH NE     AYY+
Sbjct: 758 REEAFKDFHNMLSFKYSANEIYEFCGTHSRAEVHKNEVLKRMAYYL 803


>SPBC211.02c |cwf3|syf1|complexed with Cdc5 protein Cwf3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 790

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = +1

Query: 232 DSFYQLLMKFIHNSSLIWTLYLRFI 306
           D F + L+  +H   +IW LYL+F+
Sbjct: 96  DCFERSLI-LLHKMPVIWKLYLQFL 119


>SPBC1711.09c |||SNARE associated Golgi protein |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 270

 Score = 23.8 bits (49), Expect = 8.5
 Identities = 12/36 (33%), Positives = 17/36 (47%), Gaps = 2/36 (5%)
 Frame = +1

Query: 232 DSFYQLLMKFIHNSS--LIWTLYLRFIALKCKTVFF 333
           +  Y   +K +   S  LIW + L F+     TVFF
Sbjct: 115 EEHYGTFVKIVEEGSYPLIWLIRLSFLPTHFTTVFF 150


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,466,572
Number of Sequences: 5004
Number of extensions: 27089
Number of successful extensions: 63
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 62
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 63
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 114084208
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)