Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C22
(257 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC609.03 |||WD repeat protein, human IQWD1 family|Schizosaccha... 27 0.31
SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces... 25 1.3
SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces pomb... 25 1.3
SPAC31A2.14 |||WD repeat protein, human WRDR48 family|Schizosacc... 24 3.8
SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces... 24 3.8
SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual 23 5.1
SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor |Schizo... 23 6.7
SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomy... 23 6.7
SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase ... 23 6.7
SPBC2F12.13 |klp5|sot1|kinesin-like protein Klp5|Schizosaccharom... 23 6.7
SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|ch... 23 8.9
SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|c... 23 8.9
SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces pomb... 23 8.9
>SPBC609.03 |||WD repeat protein, human IQWD1
family|Schizosaccharomyces pombe|chr 2|||Manual
Length = 809
Score = 27.5 bits (58), Expect = 0.31
Identities = 10/25 (40%), Positives = 16/25 (64%)
Frame = +1
Query: 55 SNDTLIQVWKPHEKYEMLHILSKGH 129
S+DT + VW +Y+ H++S GH
Sbjct: 64 SDDTRLIVWDVFNEYKPRHLISTGH 88
>SPAC13D6.02c |byr3||zinc finger protein Byr3|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 179
Score = 25.4 bits (53), Expect = 1.3
Identities = 12/28 (42%), Positives = 13/28 (46%)
Frame = +2
Query: 26 RKCSTRGCLSPTIPSSKFGNHMKNMRCY 109
R C T G S +FG H NM CY
Sbjct: 96 RDCRTNGQQS----GGRFGGHRSNMNCY 119
>SPCC594.05c |||COMPASS complex subunit |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 424
Score = 25.4 bits (53), Expect = 1.3
Identities = 11/35 (31%), Positives = 19/35 (54%)
Frame = +2
Query: 26 RKCSTRGCLSPTIPSSKFGNHMKNMRCYTS*VKVT 130
RKC R C +PT P+S + + + + VK++
Sbjct: 177 RKCRLRECSNPTRPNSNYCSDKHGVDFFREKVKLS 211
>SPAC31A2.14 |||WD repeat protein, human WRDR48
family|Schizosaccharomyces pombe|chr 1|||Manual
Length = 962
Score = 23.8 bits (49), Expect = 3.8
Identities = 9/18 (50%), Positives = 14/18 (77%), Gaps = 1/18 (5%)
Frame = +1
Query: 40 EGV-PLSNDTLIQVWKPH 90
EGV S+D+ +++WKPH
Sbjct: 92 EGVISCSSDSTVKLWKPH 109
>SPBC16C6.13c |sec27||coatomer beta' subunit |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 796
Score = 23.8 bits (49), Expect = 3.8
Identities = 12/46 (26%), Positives = 20/46 (43%)
Frame = +2
Query: 47 CLSPTIPSSKFGNHMKNMRCYTS*VKVTKSSTHPLGTSDHLMSGGD 184
CL T+ FG+ + N V + +P G +L++ GD
Sbjct: 161 CLDGTVKVWSFGSSVANFTLQAHDRGVNYVNYYPAGDKPYLITAGD 206
>SPBC19G7.08c |||arrestin|Schizosaccharomyces pombe|chr 2|||Manual
Length = 483
Score = 23.4 bits (48), Expect = 5.1
Identities = 11/32 (34%), Positives = 14/32 (43%)
Frame = +2
Query: 53 SPTIPSSKFGNHMKNMRCYTS*VKVTKSSTHP 148
S IPS NH+ + +C V S HP
Sbjct: 67 SVVIPSLGISNHLSDNKCLARQVLFPLHSEHP 98
>SPBC3E7.12c |chr1|cfh4|chitin synthase regulatory factor
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 456
Score = 23.0 bits (47), Expect = 6.7
Identities = 9/14 (64%), Positives = 10/14 (71%)
Frame = -2
Query: 133 LCDLYLRCVASHIF 92
LC LYLR + HIF
Sbjct: 371 LCKLYLRGLPGHIF 384
>SPBC11G11.06c |sme1||Sm snRNP core protein Sme1|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 84
Score = 23.0 bits (47), Expect = 6.7
Identities = 13/39 (33%), Positives = 19/39 (48%)
Frame = +1
Query: 34 FDEGVPLSNDTLIQVWKPHEKYEMLHILSKGHKVVYSSA 150
FDE + + D +QV + K E+ IL KG + A
Sbjct: 45 FDEFMNIVLDDAVQVDAKNNKRELGRILLKGDNITLIQA 83
>SPAC1805.01c |ppk6|SPAPJ736.02c|serine/threonine protein kinase
Ppk6|Schizosaccharomyces pombe|chr 1|||Manual
Length = 775
Score = 23.0 bits (47), Expect = 6.7
Identities = 8/34 (23%), Positives = 18/34 (52%)
Frame = +1
Query: 10 TPVVWQEVFDEGVPLSNDTLIQVWKPHEKYEMLH 111
+PV+ ++ D +PL + +W+ Y++ H
Sbjct: 65 SPVLSRDANDGYIPLDTSSRANLWESVTDYDLQH 98
>SPBC2F12.13 |klp5|sot1|kinesin-like protein
Klp5|Schizosaccharomyces pombe|chr 2|||Manual
Length = 883
Score = 23.0 bits (47), Expect = 6.7
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 34 FDEGVPLSNDTLIQVWKPHEKYEMLHIL 117
F+E +PL NDT+ +V K + + +L
Sbjct: 464 FEETLPLQNDTINKVEKVKHFDDSIRVL 491
>SPBC13G1.07 |||palmitoyltransferase|Schizosaccharomyces pombe|chr
2|||Manual
Length = 356
Score = 22.6 bits (46), Expect = 8.9
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -2
Query: 124 LYLRCVASHIFHVVSKLG*GYRWREAPPRRTLPAIQLVW 8
L+L C +FH + +L GY + R P+ W
Sbjct: 205 LFLLCTIQLLFHSILRL--GYHFNALRDMRQYPSFLRSW 241
>SPCC895.03c |||SUA5/yciO/yrdC family|Schizosaccharomyces pombe|chr
3|||Manual
Length = 408
Score = 22.6 bits (46), Expect = 8.9
Identities = 10/21 (47%), Positives = 11/21 (52%)
Frame = +2
Query: 188 TNFYLSDPRQMVRQYSPTANV 250
T+F P R YSPTA V
Sbjct: 276 TDFIPQTPGMKYRHYSPTAKV 296
>SPBC1734.06 |rhp18||Rad18 homolog Rhp18|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 387
Score = 22.6 bits (46), Expect = 8.9
Identities = 7/27 (25%), Positives = 12/27 (44%)
Frame = +2
Query: 149 LGTSDHLMSGGDWTNFYLSDPRQMVRQ 229
+G + GGDW Y D ++ +
Sbjct: 307 IGVEKEKLGGGDWEKAYAEDFADLINR 333
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,204,060
Number of Sequences: 5004
Number of extensions: 19845
Number of successful extensions: 71
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 71
length of database: 2,362,478
effective HSP length: 60
effective length of database: 2,062,238
effective search space used: 51555950
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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