Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C22
(257 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
10_08_0767 + 20441959-20443152 30 0.22
04_01_0141 + 1631649-1631727,1633607-1633651,1633841-1634454,163... 29 0.52
10_08_0486 - 18239351-18239592,18240893-18240984,18241279-182413... 28 0.90
08_02_1063 + 24024030-24024506,24024803-24024856,24024965-240251... 27 2.1
12_02_0386 + 18429675-18430679,18431001-18431111,18431139-184311... 27 2.7
08_01_1006 - 10191817-10191822,10192449-10192745,10192826-101929... 26 4.8
07_03_1113 - 24068441-24068923 26 4.8
05_05_0255 + 23643568-23644761 26 4.8
04_01_0172 - 1954275-1954533,1954546-1954873,1955772-1956174 26 4.8
11_01_0455 + 3517281-3519798,3519888-3520261 25 6.3
10_08_0004 + 14022511-14022670,14022740-14023049,14023193-140234... 25 6.3
10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028 25 6.3
08_01_0061 - 428885-428920,429021-429164,429376-429541,429612-42... 25 6.3
03_04_0243 + 19298293-19299117 25 6.3
03_03_0227 - 15596445-15596522,15596635-15596767,15596861-155969... 25 6.3
02_01_0699 - 5220896-5221345,5221403-5221504,5221694-5222343,522... 25 6.3
07_03_1100 + 23961181-23962599 25 8.4
06_01_0034 - 350614-350976 25 8.4
>10_08_0767 + 20441959-20443152
Length = 397
Score = 30.3 bits (65), Expect = 0.22
Identities = 15/36 (41%), Positives = 18/36 (50%)
Frame = +2
Query: 131 KSSTHPLGTSDHLMSGGDWTNFYLSDPRQMVRQYSP 238
K+S LG S L GG WT F + P + QY P
Sbjct: 207 KNSRLFLGASAKLAGGGAWTPFVKTSPNDGMSQYYP 242
>04_01_0141 +
1631649-1631727,1633607-1633651,1633841-1634454,
1634569-1634627,1634721-1634911,1636739-1637073
Length = 440
Score = 29.1 bits (62), Expect = 0.52
Identities = 15/41 (36%), Positives = 23/41 (56%), Gaps = 1/41 (2%)
Frame = +1
Query: 28 EVFDEGVPLSNDTL-IQVWKPHEKYEMLHILSKGHKVVYSS 147
+ D+ V D L + + P E Y LH+++KG VVYS+
Sbjct: 164 KAMDDAVHDGVDILSLSIGGPFENYGTLHVVAKGIPVVYSA 204
>10_08_0486 -
18239351-18239592,18240893-18240984,18241279-18241364,
18241442-18241643,18241743-18241960,18242524-18242640
Length = 318
Score = 28.3 bits (60), Expect = 0.90
Identities = 13/34 (38%), Positives = 18/34 (52%)
Frame = +2
Query: 122 KVTKSSTHPLGTSDHLMSGGDWTNFYLSDPRQMV 223
KV+K+ P G + H + G WTN D +MV
Sbjct: 257 KVSKTHLAPFGLAAHKLQGSLWTNPRTGDRDRMV 290
>08_02_1063 +
24024030-24024506,24024803-24024856,24024965-24025118,
24025314-24025388,24025511-24025788,24026023-24026253,
24026522-24026620,24026740-24026889,24027830-24027976,
24028525-24028575,24028647-24028819,24029018-24029147,
24029361-24029458,24029655-24029892,24030634-24030837,
24031003-24031083,24031296-24031535
Length = 959
Score = 27.1 bits (57), Expect = 2.1
Identities = 13/31 (41%), Positives = 17/31 (54%)
Frame = +1
Query: 46 VPLSNDTLIQVWKPHEKYEMLHILSKGHKVV 138
V + D +I KPHEK + L K HK+V
Sbjct: 779 VGIQADKVIAEVKPHEKKSFISELQKEHKLV 809
>12_02_0386 +
18429675-18430679,18431001-18431111,18431139-18431195,
18431552-18431589,18431688-18431733,18431811-18431849
Length = 431
Score = 26.6 bits (56), Expect = 2.7
Identities = 11/32 (34%), Positives = 18/32 (56%)
Frame = +1
Query: 4 KSTPVVWQEVFDEGVPLSNDTLIQVWKPHEKY 99
K+ W +FD G +S++ L+ V + EKY
Sbjct: 391 KTCDTFWIPIFDVGSGISSEALLNVVENKEKY 422
>08_01_1006 -
10191817-10191822,10192449-10192745,10192826-10192975,
10194558-10195370
Length = 421
Score = 25.8 bits (54), Expect = 4.8
Identities = 10/14 (71%), Positives = 10/14 (71%)
Frame = -1
Query: 248 RWRWGCTGAPSAVD 207
R WGC GAPSA D
Sbjct: 53 RLGWGCRGAPSARD 66
>07_03_1113 - 24068441-24068923
Length = 160
Score = 25.8 bits (54), Expect = 4.8
Identities = 7/9 (77%), Positives = 8/9 (88%)
Frame = -1
Query: 245 WRWGCTGAP 219
WRWGC G+P
Sbjct: 68 WRWGCGGSP 76
>05_05_0255 + 23643568-23644761
Length = 397
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/18 (44%), Positives = 11/18 (61%)
Frame = +3
Query: 201 CQIHGRWCASTAPPPTLT 254
C+ HG+W APP +T
Sbjct: 357 CRDHGKWLPPVAPPAAVT 374
>04_01_0172 - 1954275-1954533,1954546-1954873,1955772-1956174
Length = 329
Score = 25.8 bits (54), Expect = 4.8
Identities = 8/15 (53%), Positives = 9/15 (60%)
Frame = +3
Query: 201 CQIHGRWCASTAPPP 245
C RWC+S PPP
Sbjct: 256 CSDRQRWCSSVIPPP 270
>11_01_0455 + 3517281-3519798,3519888-3520261
Length = 963
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/44 (29%), Positives = 23/44 (52%), Gaps = 2/44 (4%)
Frame = +1
Query: 4 KSTPVVWQEVFDEGV--PLSNDTLIQVWKPHEKYEMLHILSKGH 129
K +PV +E+F EG+ L+ P+E+ +M + +K H
Sbjct: 909 KESPVAMKEIFSEGLHSVLNIGLCCTKQSPYERMDMREVAAKLH 952
>10_08_0004 +
14022511-14022670,14022740-14023049,14023193-14023414,
14023497-14023721,14024045-14024119,14024619-14024754,
14025124-14025251,14025337-14025419,14025505-14025626,
14025732-14025810,14026252-14026420,14026562-14026622,
14026729-14026851,14027675-14027914,14028045-14028113,
14028353-14028429,14028527-14028593
Length = 781
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/31 (29%), Positives = 15/31 (48%)
Frame = +1
Query: 64 TLIQVWKPHEKYEMLHILSKGHKVVYSSAWY 156
T ++VW P + +HI H +Y W+
Sbjct: 128 TKLEVWGPCQLENEIHIAQSVHGSLYVDEWF 158
>10_02_0053 + 4607915-4608635,4609422-4609681,4609984-4610028
Length = 341
Score = 25.4 bits (53), Expect = 6.3
Identities = 12/34 (35%), Positives = 21/34 (61%), Gaps = 1/34 (2%)
Frame = +1
Query: 61 DTLIQ-VWKPHEKYEMLHILSKGHKVVYSSAWYL 159
D LI+ +++ E+ +ILSKG K +++ W L
Sbjct: 125 DNLIEEIYRDVEEKMNAYILSKGSKPIFNQQWKL 158
>08_01_0061 -
428885-428920,429021-429164,429376-429541,429612-429742,
429884-429939,430513-430687
Length = 235
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/27 (33%), Positives = 17/27 (62%)
Frame = -2
Query: 151 KRMSRRLCDLYLRCVASHIFHVVSKLG 71
++ +R + L CV+ HI HV+ ++G
Sbjct: 36 QQRQKRSSTMDLLCVSKHIIHVLDEIG 62
>03_04_0243 + 19298293-19299117
Length = 274
Score = 25.4 bits (53), Expect = 6.3
Identities = 9/17 (52%), Positives = 13/17 (76%)
Frame = +3
Query: 24 AGSVRRGGASLQRYPHP 74
AGS R+ G+ Q++PHP
Sbjct: 73 AGSSRKSGSRQQQHPHP 89
>03_03_0227 -
15596445-15596522,15596635-15596767,15596861-15596913,
15597825-15597875,15597999-15598068,15598402-15598586,
15598727-15598780,15599060-15599581
Length = 381
Score = 25.4 bits (53), Expect = 6.3
Identities = 13/32 (40%), Positives = 18/32 (56%)
Frame = -3
Query: 252 STLAVGLYWRTICRGSDK*KLVQSPPDIKWSE 157
S L+VG R++ G+ K KL P D+ W E
Sbjct: 226 SKLSVGDSIRSVMNGAIKEKLKIIPKDVVWEE 257
>02_01_0699 -
5220896-5221345,5221403-5221504,5221694-5222343,
5222445-5222793,5223189-5223510,5223621-5224123,
5224486-5224578,5224708-5224759,5224837-5225129,
5225208-5225630,5225734-5226070,5226185-5226220,
5226272-5226589,5227465-5228450
Length = 1637
Score = 25.4 bits (53), Expect = 6.3
Identities = 15/53 (28%), Positives = 27/53 (50%), Gaps = 2/53 (3%)
Frame = -2
Query: 172 HQMVXGTKRMSRRLCDLYLRCVASHIFH--VVSKLG*GYRWREAPPRRTLPAI 20
H ++ + S ++ D L CVA ++H +V LG G ++P + L A+
Sbjct: 78 HALLLALESASPKVADPALDCVAKLLYHRLLVGDLGGGGGDDDSPSSKLLAAV 130
>07_03_1100 + 23961181-23962599
Length = 472
Score = 25.0 bits (52), Expect = 8.4
Identities = 10/25 (40%), Positives = 15/25 (60%)
Frame = +1
Query: 79 WKPHEKYEMLHILSKGHKVVYSSAW 153
W + + L + KGH VV++SAW
Sbjct: 445 WGMKREDDDLVLTWKGHNVVFASAW 469
>06_01_0034 - 350614-350976
Length = 120
Score = 25.0 bits (52), Expect = 8.4
Identities = 14/38 (36%), Positives = 20/38 (52%), Gaps = 2/38 (5%)
Frame = -1
Query: 119 LKMCSISYFSCG-FQTWMRVSLERG-TPSSNTSCHTTG 12
LK + FSCG F ++L TP++N +CH G
Sbjct: 55 LKPSLRALFSCGIFSACTHLALSPTVTPNNNVACHQAG 92
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,885,471
Number of Sequences: 37544
Number of extensions: 150443
Number of successful extensions: 424
Number of sequences better than 10.0: 18
Number of HSP's better than 10.0 without gapping: 421
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 424
length of database: 14,793,348
effective HSP length: 64
effective length of database: 12,390,532
effective search space used: 260201172
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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