Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C21
         (530 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|ch...    27   1.7  
SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr 1|||Ma...    26   3.0  
SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit ...    26   4.0  
SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28 |Schizo...    26   4.0  
SPAC23H4.07c |srp102||signal recognition particle receptor beta ...    25   7.0  
SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma sub...    25   9.3  
SPAC343.17c |||WD repeat protein, human WDR70 family|Schizosacch...    25   9.3  
SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces pomb...    25   9.3  
SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|...    25   9.3  

>SPCC306.08c |||malate dehydrogenase|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 341

 Score = 27.1 bits (57), Expect = 1.7
 Identities = 13/44 (29%), Positives = 21/44 (47%)
 Frame = +2

Query: 242 ADDVLHIFKFPSIEAKSPDDVXMTDSLIGMVYSFASTGIPKVPG 373
           A D+ HI    ++   +PDD  +  +L G        G+P+ PG
Sbjct: 69  AADIGHINTTSNVVGYAPDDKGLEKALNGADVVIIPAGVPRKPG 112


>SPAC1D4.05c |||Erd1 homolog|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 387

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 11/27 (40%), Positives = 14/27 (51%)
 Frame = -2

Query: 433 YLQVVDIRIAWLHRQPFHTRAGHFRYP 353
           Y  + D+ I W  R PFH    H R+P
Sbjct: 301 YTFLWDVFIDWRIRFPFHKSINHKRFP 327


>SPCC1919.14c |bdp1||transcription factor TFIIIB complex subunit
           Bdp1 |Schizosaccharomyces pombe|chr 3|||Manual
          Length = 507

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 9/21 (42%), Positives = 16/21 (76%)
 Frame = +1

Query: 415 YQLPGDIFPNKNRDEIKLRFR 477
           + L  ++FP +NR +IKL+F+
Sbjct: 387 FALIANMFPTRNRRQIKLKFK 407


>SPBC19C2.01 |cdc28|prp8|ATP-dependent RNA helicase Cdc28
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1055

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 11/24 (45%), Positives = 12/24 (50%)
 Frame = -2

Query: 136 SVHLSQHAYRDNEQPVTERLNKLR 65
           S     H Y  +  P TERLN LR
Sbjct: 159 STDFQNHDYEKSSDPETERLNDLR 182


>SPAC23H4.07c |srp102||signal recognition particle receptor beta
           subunit Srp102 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 227

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 15/54 (27%), Positives = 22/54 (40%), Gaps = 5/54 (9%)
 Frame = +2

Query: 266 KFPSIEAKSPDDVXMTDSLIGMVYSFASTGIPKV-PGSSV----KWLPVKPGDP 412
           K P++    P D   T     ++Y    T +P + P  +V     WL   PG P
Sbjct: 36  KLPAVFLIGPSDSGKTSLFCELIYKEKKTTVPSIEPNEAVWKYGAWLVDLPGHP 89


>SPBC800.08 |gcd10||translation initiation factor eIF-3 gamma
           subunit Gcd10|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 462

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/32 (34%), Positives = 16/32 (50%)
 Frame = -1

Query: 509 LVQGYPRKIFYRNLSLISSLFLLGNISPGS*Y 414
           +++  P KI       IS +  LGN+ PG  Y
Sbjct: 164 MIEHDPYKILDLTAECISLMLTLGNVKPGGRY 195


>SPAC343.17c |||WD repeat protein, human WDR70
           family|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 576

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/18 (44%), Positives = 12/18 (66%)
 Frame = +2

Query: 350 TGIPKVPGSSVKWLPVKP 403
           TG+ ++P +S  W P KP
Sbjct: 246 TGLSRIPVTSCAWNPAKP 263


>SPBC4F6.13c |||WD repeat/BOP1NT protein|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 736

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 11/28 (39%), Positives = 17/28 (60%)
 Frame = +2

Query: 401 PGDPDINYLEIYSPTKTEMKSSSDFGKR 484
           P  P  ++ E Y+P +  +K SSDF K+
Sbjct: 285 PKLPPPSHEESYNPPEEYLKQSSDFPKK 312


>SPBC27B12.03c |||lathosterol oxidase |Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 329

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 10/27 (37%), Positives = 14/27 (51%)
 Frame = -2

Query: 460 FHLCFCWGIYLQVVDIRIAWLHRQPFH 380
           F+L F   ++L   D  I W+HR   H
Sbjct: 149 FYLFFSIALFLLFSDFLIYWIHRALHH 175


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,342,810
Number of Sequences: 5004
Number of extensions: 50092
Number of successful extensions: 142
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 140
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)