Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C21
         (530 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_05_0628 - 30466535-30468001                                         31   0.58 
02_01_0266 - 1758439-1758599,1758682-1758769,1759363-1759564,175...    30   1.0  
11_01_0453 + 3512645-3514246                                           28   4.1  
05_06_0225 - 26555217-26555280,26555647-26555713,26555800-265558...    28   4.1  
12_02_1081 + 25914180-25914371,25918121-25919104                       28   5.4  
08_02_0903 + 22438406-22438614,22439640-22440366,22440494-224406...    27   7.1  
06_03_0084 - 16386962-16387033,16387124-16387175,16387252-163873...    27   7.1  
02_05_0510 + 29637160-29637506,29637714-29637775,29638047-296381...    27   7.1  

>02_05_0628 - 30466535-30468001
          Length = 488

 Score = 31.1 bits (67), Expect = 0.58
 Identities = 26/69 (37%), Positives = 37/69 (53%), Gaps = 4/69 (5%)
 Frame = +2

Query: 20  KQHYLDGKAVSQDTYPQLVEALS--DRLFVVPVGMLAQMHA--IKSGQPTYVYRYSYRAT 187
           ++H+LDG+A+  +  P LV AL+   RL         Q+HA  +KSG P  V      A+
Sbjct: 48  RRHHLDGRALHAN--PALVPALAACARLLPSAAAEAEQIHALLVKSGDPPSV--SGVYAS 103

Query: 188 TSLSNLMAR 214
           TSL  + AR
Sbjct: 104 TSLVRVYAR 112


>02_01_0266 -
           1758439-1758599,1758682-1758769,1759363-1759564,
           1759664-1759800,1760169-1760268,1760350-1760522,
           1760797-1760941,1761018-1761139,1761225-1761470,
           1761962-1762182,1762278-1762338,1762409-1762487,
           1762572-1762651,1763221-1763292,1763382-1763449,
           1763550-1763588,1763828-1763903,1763992-1764006
          Length = 694

 Score = 30.3 bits (65), Expect = 1.0
 Identities = 18/53 (33%), Positives = 30/53 (56%), Gaps = 4/53 (7%)
 Frame = +2

Query: 5   VAAKIKQHYLDGKAVSQDTYPQLVEAL----SDRLFVVPVGMLAQMHAIKSGQ 151
           VA+K  ++YLDGK VS+     L+E+     S+  +VV  G +A +  +K  +
Sbjct: 102 VASKKDEYYLDGKHVSKTEVMNLLESAGFSRSNPYYVVQQGKIASLTLMKDSE 154


>11_01_0453 + 3512645-3514246
          Length = 533

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -3

Query: 450 VFVGEYISR*LISGSPGFTGSHFTLEPGTFGIP 352
           + VG+ I R +I+GS    G + T    TFG P
Sbjct: 241 MLVGDGIGRTVITGSRSVRGGYTTFSSATFGTP 273


>05_06_0225 -
           26555217-26555280,26555647-26555713,26555800-26555871,
           26557058-26557109,26557250-26557302,26557476-26557535,
           26557718-26558075
          Length = 241

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/43 (34%), Positives = 20/43 (46%)
 Frame = -2

Query: 169 PVNVSRLSRFDSVHLSQHAYRDNEQPVTERLNKLRVCVLTNSF 41
           PV+   L  FD VHL +   RDN   +   ++K  V  L   F
Sbjct: 70  PVSAVALLEFDPVHLIRRPPRDNSPSLNRAMSKQLVSRLLGMF 112


>12_02_1081 + 25914180-25914371,25918121-25919104
          Length = 391

 Score = 27.9 bits (59), Expect = 5.4
 Identities = 10/13 (76%), Positives = 10/13 (76%)
 Frame = -2

Query: 397 HRQPFHTRAGHFR 359
           HRQPFH  AGH R
Sbjct: 189 HRQPFHVEAGHRR 201


>08_02_0903 +
           22438406-22438614,22439640-22440366,22440494-22440679,
           22441310-22441770,22441869-22442027,22442098-22442449,
           22442563-22442842,22443330-22443661
          Length = 901

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/34 (41%), Positives = 18/34 (52%)
 Frame = -2

Query: 445 CWGIYLQVVDIRIAWLHRQPFHTRAGHFRYPGGG 344
           C GI+   V IR   +H Q  +  A H+RY  GG
Sbjct: 591 CEGIHPFEVQIRTKEMHLQAEYGFAAHWRYKEGG 624


>06_03_0084 -
           16386962-16387033,16387124-16387175,16387252-16387313,
           16387509-16387543,16387637-16387679,16388610-16388692,
           16388829-16388917,16390415-16390681,16391370-16391446,
           16391546-16391677,16391802-16391870,16392464-16392529,
           16392603-16392773,16392848-16392916,16393005-16393086,
           16393175-16393219,16393535-16393659,16394271-16394525,
           16396561-16396722
          Length = 651

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 14/37 (37%), Positives = 18/37 (48%)
 Frame = +2

Query: 194 LSNLMARNDDDYGVCHADDVLHIFKFPSIEAKSPDDV 304
           L N  A  D+  G CH D V   FK    EA  P+++
Sbjct: 342 LKNAAALIDNTNGTCHLDGVNSKFKDGLQEANEPENI 378


>02_05_0510 +
           29637160-29637506,29637714-29637775,29638047-29638161,
           29638296-29638419,29638604-29638684,29639122-29639463,
           29639562-29639728,29639810-29640639,29641103-29642568
          Length = 1177

 Score = 27.5 bits (58), Expect = 7.1
 Identities = 12/24 (50%), Positives = 17/24 (70%)
 Frame = +2

Query: 80  ALSDRLFVVPVGMLAQMHAIKSGQ 151
           AL   LF VPV +L++ HA+ SG+
Sbjct: 769 ALVGELFTVPVTILSKGHAVHSGE 792


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,414,565
Number of Sequences: 37544
Number of extensions: 343405
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 851
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 871
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)