Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C19
(664 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162 30 1.4
12_01_0077 - 637470-638114 30 1.9
11_01_0076 - 600256-600897 30 1.9
09_01_0175 - 2509014-2509064,2509389-2509490,2509603-2509729,250... 30 1.9
12_01_0874 + 8384332-8384657,8385447-8386044 29 3.3
11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364 28 5.8
03_05_0298 - 22873933-22874040,22874807-22875407,22875517-228755... 28 5.8
09_04_0194 + 15504780-15506114 28 7.6
07_01_0684 - 5161218-5161427,5161509-5161616,5162217-5162390,516... 28 7.6
05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563 28 7.6
02_05_0781 + 31715100-31715672 28 7.6
>02_04_0144 - 20177136-20177231,20177525-20178010,20178103-20178162
Length = 213
Score = 30.3 bits (65), Expect = 1.4
Identities = 18/42 (42%), Positives = 21/42 (50%)
Frame = -1
Query: 169 GRRRCQQRGGEPTARALYAHVHSPPRHSAAPGERASATPARA 44
G R GG + A YAH H H+AAP +S PARA
Sbjct: 89 GEERHTGGGGGGSHHAHYAHGHGHA-HAAAPSPSSSWAPARA 129
>12_01_0077 - 637470-638114
Length = 214
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 169 GRRRCQQRGGEPTARALYAHVHSPPRHS-AAPGERASATPARASHCTS 29
G R R A L+ ++ SPP+HS A G ASA +H S
Sbjct: 25 GHRHLNVRSPSAAAAVLFRNIPSPPQHSLAGVGVSASAPVRNDAHVVS 72
>11_01_0076 - 600256-600897
Length = 213
Score = 29.9 bits (64), Expect = 1.9
Identities = 17/48 (35%), Positives = 22/48 (45%), Gaps = 1/48 (2%)
Frame = -1
Query: 169 GRRRCQQRGGEPTARALYAHVHSPPRHS-AAPGERASATPARASHCTS 29
G R R A L+ ++ SPP+HS A G ASA +H S
Sbjct: 25 GHRHLNVRSPSAAAAVLFRNIPSPPQHSLAGVGVSASAPVRNDAHVVS 72
>09_01_0175 -
2509014-2509064,2509389-2509490,2509603-2509729,
2509852-2511564,2512335-2512424,2512533-2512801,
2513118-2513687,2513703-2514065
Length = 1094
Score = 29.9 bits (64), Expect = 1.9
Identities = 15/34 (44%), Positives = 21/34 (61%), Gaps = 2/34 (5%)
Frame = +1
Query: 193 RNVFRRKTNPGTVCRVVVLVKHVPRT--LRTSAE 288
R +R TNPGT+C V+ K+ P T L +SA+
Sbjct: 23 RQAWRLLTNPGTLCARVLKAKYYPHTDVLHSSAK 56
>12_01_0874 + 8384332-8384657,8385447-8386044
Length = 307
Score = 29.1 bits (62), Expect = 3.3
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +3
Query: 42 DALAGVADARSPGAALCLGGECTCAYNARAVGSPP 146
D+ AG + S G LC GG C A+ A + PP
Sbjct: 240 DSRAGASAGGSLGGGLC-GGACAAAWEAAEMRGPP 273
>11_02_0124 + 8568012-8568392,8568532-8568798,8568963-8569364
Length = 349
Score = 28.3 bits (60), Expect = 5.8
Identities = 15/41 (36%), Positives = 21/41 (51%)
Frame = -1
Query: 160 RCQQRGGEPTARALYAHVHSPPRHSAAPGERASATPARASH 38
+ + + G TA A+ +VH H+ A G RA P ASH
Sbjct: 266 KSELKEGITTAPAIQDNVHEATGHNIAAGLRAVMEPLFASH 306
>03_05_0298 -
22873933-22874040,22874807-22875407,22875517-22875596,
22875685-22875816
Length = 306
Score = 28.3 bits (60), Expect = 5.8
Identities = 12/38 (31%), Positives = 20/38 (52%)
Frame = -1
Query: 166 RRRCQQRGGEPTARALYAHVHSPPRHSAAPGERASATP 53
R+R + + G+ A AL++ H PP H++ R P
Sbjct: 157 RKRGRMKLGDDAASALWSEWHHPPSHASRLARRRCPQP 194
>09_04_0194 + 15504780-15506114
Length = 444
Score = 27.9 bits (59), Expect = 7.6
Identities = 17/44 (38%), Positives = 21/44 (47%), Gaps = 6/44 (13%)
Frame = +3
Query: 33 VQCDALAGVADARSPGAALCLGGEC------TCAYNARAVGSPP 146
V CDA AG A + G C C +C+Y A +GSPP
Sbjct: 83 VDCDAAAGYASSSYAGVP-CGSKPCRLVESPSCSYIASCLGSPP 125
>07_01_0684 -
5161218-5161427,5161509-5161616,5162217-5162390,
5162515-5162643,5162722-5163009,5163114-5163346,
5164235-5165060
Length = 655
Score = 27.9 bits (59), Expect = 7.6
Identities = 16/40 (40%), Positives = 18/40 (45%)
Frame = -1
Query: 340 NIDKMAAGKTGDGETVLAPPKSLASGEHVLQVQRPDKQYP 221
+I A G GDG + P LA G HV V RP P
Sbjct: 153 SISVHADGLPGDGVRTVELPCGLAVGSHVTVVARPRAARP 192
>05_07_0014 - 27046329-27046371,27059170-27060017,27060739-27061563
Length = 571
Score = 27.9 bits (59), Expect = 7.6
Identities = 14/43 (32%), Positives = 20/43 (46%)
Frame = -1
Query: 169 GRRRCQQRGGEPTARALYAHVHSPPRHSAAPGERASATPARAS 41
G R P++RA Y+ V+SP H +P TP +S
Sbjct: 192 GSARTPSGPRSPSSRAPYSPVYSPYPHPVSPSYTPGHTPVASS 234
>02_05_0781 + 31715100-31715672
Length = 190
Score = 27.9 bits (59), Expect = 7.6
Identities = 18/48 (37%), Positives = 24/48 (50%), Gaps = 5/48 (10%)
Frame = -1
Query: 160 RCQQRGGEPTARALYAHVHSPPR-----HSAAPGERASATPARASHCT 32
R QQ G+ A A+ + P R H+AAP R SA+ +R S T
Sbjct: 37 RLQQPAGKAAAAAVVSAAAQPQRAAKKRHAAAPPPRPSASTSRRSSTT 84
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,339,824
Number of Sequences: 37544
Number of extensions: 292727
Number of successful extensions: 1145
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1103
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1144
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1667659452
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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