Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C18
(491 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC3A12.05c |taf2||TATA-binding protein associated factor Taf2|... 28 0.66
SPAC227.15 |||protein phosphatase regulatory subunit Reg1 |Schiz... 26 2.7
SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein Did4... 26 2.7
SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces ... 26 2.7
SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificit... 26 3.5
SPBC902.02c |ctf18|chl12|DNA replication factor C complex subuni... 26 3.5
SPBC30B4.02c |||R3H and G-patch domain, unknown biological role|... 26 3.5
SPCC1494.06c |||ATP-dependent RNA helicase Dbp9 |Schizosaccharom... 25 4.7
SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subuni... 25 4.7
SPBC19G7.16 |iws1||transcription elongation factor complex subun... 25 4.7
SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr ... 25 4.7
SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subu... 25 6.2
SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomy... 25 6.2
SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr 3|||... 25 6.2
SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regula... 25 8.2
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|... 25 8.2
>SPAC3A12.05c |taf2||TATA-binding protein associated factor
Taf2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1174
Score = 28.3 bits (60), Expect = 0.66
Identities = 20/77 (25%), Positives = 32/77 (41%), Gaps = 1/77 (1%)
Frame = +2
Query: 227 DVDFDLKDDIK-SEPEDEYESADENEISGLPDLSLYEHELSAALDYSGGWRPLASHLQLD 403
D DF+ D++ +PE Y S + + + L H S + S + LD
Sbjct: 705 DADFEWICDLRVRQPEHMYVSQLQQDRDVVAQLETIRHFTSESFTVSQQVSTVLLRTLLD 764
Query: 404 NTAWYSAQPSAARTLLK 454
N +Y + AAR L +
Sbjct: 765 NRYYYGIRQEAARALAR 781
>SPAC227.15 |||protein phosphatase regulatory subunit Reg1
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 873
Score = 26.2 bits (55), Expect = 2.7
Identities = 27/88 (30%), Positives = 36/88 (40%)
Frame = +2
Query: 197 WYMTSAPSGQDVDFDLKDDIKSEPEDEYESADENEISGLPDLSLYEHELSAALDYSGGWR 376
WY TS+PS Q LKD +S+ ++ +E P +S E + AA S
Sbjct: 199 WYFTSSPSFQ----PLKDSDRSQTKNTHEETS-------PIVSSPEDDADAAFKPSS--L 245
Query: 377 PLASHLQLDNTAWYSAQPSAARTLLKHI 460
P S N + A P R L HI
Sbjct: 246 PSTSISASSNAFYKPAAPDNERPLDPHI 273
>SPAC4F8.01 |did4|SPAC644.03c, vps2|vacuolar sorting protein
Did4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 210
Score = 26.2 bits (55), Expect = 2.7
Identities = 19/63 (30%), Positives = 31/63 (49%)
Frame = +2
Query: 77 LRNSDEVLLEKMVDSVKAEGDTESAWSRARDKPEIRNIMKWYMTSAPSGQDVDFDLKDDI 256
L + L++++ S KA G+T +A +ARD +RN K M + Q + L+
Sbjct: 39 LDQRERALIQEIKGSAKA-GNTGAARIQARDLMRLRNSRKKMMNAKTQLQAISLRLQTMR 97
Query: 257 KSE 265
SE
Sbjct: 98 TSE 100
>SPCC4G3.12c |||ubiquitin-protein ligase E3 |Schizosaccharomyces
pombe|chr 3|||Manual
Length = 821
Score = 26.2 bits (55), Expect = 2.7
Identities = 23/90 (25%), Positives = 35/90 (38%), Gaps = 1/90 (1%)
Frame = +2
Query: 218 SGQDVDFDLKDDIKSEPEDEYESADENEISGLPDLS-LYEHELSAALDYSGGWRPLASHL 394
+G + + DD S D S + S +P S ++ S S +P
Sbjct: 554 NGSTGENHIGDDYISSLLDSSNSNSQRPFSTVPSESNVFSRNASGNFSMSQTHQPTT--- 610
Query: 395 QLDNTAWYSAQPSAARTLLKHIKECREMTS 484
DNT+ +S QP T L H R++ S
Sbjct: 611 --DNTSSFSTQPGRLSTGLHHFPSDRDLLS 638
>SPAC17G6.16c |ysh1||mRNA cleavage and polyadenylation specificity
factor complex subunit Ysh1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 775
Score = 25.8 bits (54), Expect = 3.5
Identities = 9/24 (37%), Positives = 19/24 (79%)
Frame = +2
Query: 230 VDFDLKDDIKSEPEDEYESADENE 301
++ D+K++ K+EP +E +S ++NE
Sbjct: 742 IEDDVKNENKTEPVEEQKSEEKNE 765
>SPBC902.02c |ctf18|chl12|DNA replication factor C complex subunit
Ctf18|Schizosaccharomyces pombe|chr 2|||Manual
Length = 960
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/51 (27%), Positives = 28/51 (54%)
Frame = +2
Query: 293 ENEISGLPDLSLYEHELSAALDYSGGWRPLASHLQLDNTAWYSAQPSAART 445
EN+++G + + + +LSA+ + P S ++LD + +S +ART
Sbjct: 214 ENDVNGAVNDNSLDQKLSASKNSQRVSLPFFSKIELDEGSSFSGPKISART 264
>SPBC30B4.02c |||R3H and G-patch domain, unknown biological
role|Schizosaccharomyces pombe|chr 2|||Manual
Length = 695
Score = 25.8 bits (54), Expect = 3.5
Identities = 17/69 (24%), Positives = 30/69 (43%)
Frame = +2
Query: 101 LEKMVDSVKAEGDTESAWSRARDKPEIRNIMKWYMTSAPSGQDVDFDLKDDIKSEPEDEY 280
L + + + E + E DK + K+ S D D D ++++ E E+E
Sbjct: 225 LAQAQEQLSTENEDEFDIDDTTDKMTTFTMNKFADLSVLEEDDDDEDEDEELEGEKEEEE 284
Query: 281 ESADENEIS 307
E ++ EIS
Sbjct: 285 EEKEKPEIS 293
>SPCC1494.06c |||ATP-dependent RNA helicase Dbp9
|Schizosaccharomyces pombe|chr 3|||Manual
Length = 595
Score = 25.4 bits (53), Expect = 4.7
Identities = 12/38 (31%), Positives = 23/38 (60%)
Frame = +2
Query: 83 NSDEVLLEKMVDSVKAEGDTESAWSRARDKPEIRNIMK 196
++D+ L+KM D A+ + ES + A+DK + + +K
Sbjct: 342 STDQPTLDKMKDQENADVNDESILAAAKDKSKKKKRVK 379
>SPBC29A10.15 |orc1|orp1, cdc30|origin recognition complex subunit
Orc1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 707
Score = 25.4 bits (53), Expect = 4.7
Identities = 16/62 (25%), Positives = 32/62 (51%), Gaps = 1/62 (1%)
Frame = +2
Query: 92 EVLLEKMVDSVKAEGDTESAWSRARD-KPEIRNIMKWYMTSAPSGQDVDFDLKDDIKSEP 268
E LL +M ++++ + R R K + N+ +S + +D +FDL+DD +S
Sbjct: 206 EDLLVEMEENLRPTKKKSGSRGRGRPRKYPLPNVESKESSSKVNSKDENFDLQDDSESSE 265
Query: 269 ED 274
++
Sbjct: 266 DN 267
>SPBC19G7.16 |iws1||transcription elongation factor complex subunit
Iws1 |Schizosaccharomyces pombe|chr 2|||Manual
Length = 428
Score = 25.4 bits (53), Expect = 4.7
Identities = 18/71 (25%), Positives = 28/71 (39%), Gaps = 1/71 (1%)
Frame = +2
Query: 110 MVDSVKAEGDTESAWSRARDKPEIRNI-MKWYMTSAPSGQDVDFDLKDDIKSEPEDEYES 286
M + KAE + S A+ + I K + + D D D K++ EDE
Sbjct: 1 MSEEEKAELENMQVESEAKTSENDQTIDTKVDVADVTTHVDEDLDNKEEALDFSEDELSD 60
Query: 287 ADENEISGLPD 319
DEN+ +
Sbjct: 61 LDENQFENFDE 71
>SPAC4D7.06c |||siroheme synthase |Schizosaccharomyces pombe|chr
1|||Manual
Length = 264
Score = 25.4 bits (53), Expect = 4.7
Identities = 9/29 (31%), Positives = 17/29 (58%)
Frame = +2
Query: 386 SHLQLDNTAWYSAQPSAARTLLKHIKECR 472
++ ++DN W+ A + LLKH+ + R
Sbjct: 236 AYSKIDNYIWFGAIIISGAVLLKHVSKAR 264
>SPAC3H5.06c |pol1|swi7, polA|DNA polymerase alpha catalytic subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1405
Score = 25.0 bits (52), Expect = 6.2
Identities = 19/66 (28%), Positives = 33/66 (50%)
Frame = +2
Query: 215 PSGQDVDFDLKDDIKSEPEDEYESADENEISGLPDLSLYEHELSAALDYSGGWRPLASHL 394
PS + ++++ S+P + DE E+ D + + E S A+ +PL SH
Sbjct: 212 PSSPPAALETEENVDSQPME----LDEPELPVGSDAPIIDVEESIAM------KPLMSHD 261
Query: 395 QLDNTA 412
Q+D+TA
Sbjct: 262 QVDDTA 267
>SPAC11H11.04 |mam2||pheromone p-factor receptor|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 348
Score = 25.0 bits (52), Expect = 6.2
Identities = 12/36 (33%), Positives = 20/36 (55%), Gaps = 4/36 (11%)
Frame = +2
Query: 206 TSAPSGQDVDFDLKDD----IKSEPEDEYESADENE 301
TS+ G+ + ++ D IK P D+Y +DE+E
Sbjct: 308 TSSAQGETTEVSIRVDRTFDIKHTPSDDYSISDESE 343
>SPCC895.05 |for3||formin For3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1461
Score = 25.0 bits (52), Expect = 6.2
Identities = 11/23 (47%), Positives = 16/23 (69%)
Frame = +2
Query: 80 RNSDEVLLEKMVDSVKAEGDTES 148
+NS E + EKM D+ K EGD ++
Sbjct: 1291 KNSLETIDEKMEDASKIEGDAKT 1313
>SPAC6F6.17 |rif1|tap1, tap11, SPAPJ736.01|telomere length regulator
protein Rif1|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1400
Score = 24.6 bits (51), Expect = 8.2
Identities = 15/54 (27%), Positives = 24/54 (44%)
Frame = -3
Query: 225 CPDGADVMYHFMMFLISGLSRALDQADSVSPSAFTESTIFSSNTSSEFRSPGDP 64
CP G H +S + + +D+ SVS + S+ ++EF PG P
Sbjct: 1037 CPGGKQAN-HQSSEKMSDILKGVDELRSVSKNGPYASSQDKGEKTTEFSGPGKP 1089
>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
Mts4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 891
Score = 24.6 bits (51), Expect = 8.2
Identities = 16/51 (31%), Positives = 23/51 (45%)
Frame = +2
Query: 206 TSAPSGQDVDFDLKDDIKSEPEDEYESADENEISGLPDLSLYEHELSAALD 358
+ +PSG D D K SE D + + E L DLS + +L L+
Sbjct: 8 SKSPSGNDALNDKKGTKTSETNDRNSTNNTKERDELEDLSEEDLQLKNDLE 58
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,769,352
Number of Sequences: 5004
Number of extensions: 33704
Number of successful extensions: 137
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 132
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 137
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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