Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C18
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006776-4|AAF60628.2|  354|Caenorhabditis elegans Hypothetical ...    32   0.20 
AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3...    31   0.34 
AC024206-4|AAK67240.1|  564|Caenorhabditis elegans Hypothetical ...    31   0.34 
AC024206-3|AAF36052.1|  561|Caenorhabditis elegans Hypothetical ...    31   0.34 
Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical pr...    30   1.0  
AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear recep...    30   1.0  
AY204184-1|AAO39188.1|  353|Caenorhabditis elegans nuclear recep...    30   1.0  
AL132948-37|CAD31830.2|  410|Caenorhabditis elegans Hypothetical...    28   3.2  
U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory ...    28   4.2  
L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degeneri...    28   4.2  
U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4 p...    27   5.6  
AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical ...    27   5.6  
AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts hom...    27   5.6  
Z48009-1|CAA88076.1|  329|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical p...    27   7.4  
Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical pr...    27   7.4  
Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical pr...    27   9.8  
AL132853-1|CAB60440.1|  234|Caenorhabditis elegans Hypothetical ...    27   9.8  
AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical ...    27   9.8  
AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical ...    27   9.8  

>AC006776-4|AAF60628.2|  354|Caenorhabditis elegans Hypothetical
           protein Y46H3C.6 protein.
          Length = 354

 Score = 32.3 bits (70), Expect = 0.20
 Identities = 13/26 (50%), Positives = 17/26 (65%)
 Frame = +2

Query: 224 QDVDFDLKDDIKSEPEDEYESADENE 301
           +D + D  D++K EPEDE E  DE E
Sbjct: 67  EDEEDDADDEVKEEPEDEKEPEDEEE 92


>AF000195-3|AAC24268.1|  689|Caenorhabditis elegans Hmg protein 3
           protein.
          Length = 689

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 24/76 (31%), Positives = 35/76 (46%)
 Frame = +2

Query: 83  NSDEVLLEKMVDSVKAEGDTESAWSRARDKPEIRNIMKWYMTSAPSGQDVDFDLKDDIKS 262
           +SDE  ++    +VKAEG  +   S      E  ++ K         Q  D D  +   S
Sbjct: 442 SSDEDDIDPYKSTVKAEGREQDDDSDDESTDEDYDLDK-----DMKKQKNDKDSSEGSGS 496

Query: 263 EPEDEYESADENEISG 310
           EP+DEY+S  E + SG
Sbjct: 497 EPDDEYDSGSEKDASG 512


>AC024206-4|AAK67240.1|  564|Caenorhabditis elegans Hypothetical
           protein Y74C9A.4b protein.
          Length = 564

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 26/70 (37%), Positives = 35/70 (50%)
 Frame = +2

Query: 116 DSVKAEGDTESAWSRARDKPEIRNIMKWYMTSAPSGQDVDFDLKDDIKSEPEDEYESADE 295
           D  + + + E   SR   +P IR++ K   TS  S  D D DL+D+   E EDE   A E
Sbjct: 35  DDPEEQAEQEEETSRMA-RP-IRSMRKRETTSGESMGDEDEDLEDE---EDEDEEAEARE 89

Query: 296 NEISGLPDLS 325
           +  SG  D S
Sbjct: 90  HHESGAHDTS 99


>AC024206-3|AAF36052.1|  561|Caenorhabditis elegans Hypothetical
           protein Y74C9A.4a protein.
          Length = 561

 Score = 31.5 bits (68), Expect = 0.34
 Identities = 26/70 (37%), Positives = 35/70 (50%)
 Frame = +2

Query: 116 DSVKAEGDTESAWSRARDKPEIRNIMKWYMTSAPSGQDVDFDLKDDIKSEPEDEYESADE 295
           D  + + + E   SR   +P IR++ K   TS  S  D D DL+D+   E EDE   A E
Sbjct: 32  DDPEEQAEQEEETSRMA-RP-IRSMRKRETTSGESMGDEDEDLEDE---EDEDEEAEARE 86

Query: 296 NEISGLPDLS 325
           +  SG  D S
Sbjct: 87  HHESGAHDTS 96


>Z82259-1|CAB05126.3|  437|Caenorhabditis elegans Hypothetical
           protein C28D4.1 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 227 DVDFDLKDDIKSEPEDEYESADENEISGLPDLSL 328
           ++D D+K +IK EP D  ++ DE  +   PD+++
Sbjct: 105 EIDGDVKLEIKEEPADSEDADDECPLDIKPDIAM 138


>AY305849-1|AAR11993.1|  437|Caenorhabditis elegans nuclear receptor
           NHR-100 protein.
          Length = 437

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 227 DVDFDLKDDIKSEPEDEYESADENEISGLPDLSL 328
           ++D D+K +IK EP D  ++ DE  +   PD+++
Sbjct: 105 EIDGDVKLEIKEEPADSEDADDECPLDIKPDIAM 138


>AY204184-1|AAO39188.1|  353|Caenorhabditis elegans nuclear receptor
           NHR-100 protein.
          Length = 353

 Score = 29.9 bits (64), Expect = 1.0
 Identities = 12/34 (35%), Positives = 22/34 (64%)
 Frame = +2

Query: 227 DVDFDLKDDIKSEPEDEYESADENEISGLPDLSL 328
           ++D D+K +IK EP D  ++ DE  +   PD+++
Sbjct: 21  EIDGDVKLEIKEEPADSEDADDECPLDIKPDIAM 54


>AL132948-37|CAD31830.2|  410|Caenorhabditis elegans Hypothetical
           protein Y39B6A.38 protein.
          Length = 410

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 3/42 (7%)
 Frame = -1

Query: 236 SQHLAPTA--LTSCTTS*CFLS-PACPALWTKPIPCHLQPSP 120
           S H  PTA  +++ TT+  F S PA P     PIP  + PSP
Sbjct: 261 SSHSDPTAQSISTTTTTTTFASFPATPDSIPPPIPQRITPSP 302


>U67956-5|AAB07694.1|  724|Caenorhabditis elegans Mechanosensory
           abnormality protein10 protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 348 QRWTTPAGGGRSRH-TCSSTTPRGTARSPARREPC 449
           ++WT         H  CS    +GT RS  ++EPC
Sbjct: 289 EQWTNTTCQTCDEHYLCSKKAKKGTKRSELKKEPC 323


>L25312-1|AAA17404.1|  724|Caenorhabditis elegans mec-10 degenerin
           protein.
          Length = 724

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 12/35 (34%), Positives = 17/35 (48%), Gaps = 1/35 (2%)
 Frame = +3

Query: 348 QRWTTPAGGGRSRH-TCSSTTPRGTARSPARREPC 449
           ++WT         H  CS    +GT RS  ++EPC
Sbjct: 289 EQWTNTTCQTCDEHYLCSKKAKKGTKRSELKKEPC 323


>U10401-6|AAA19061.1|  697|Caenorhabditis elegans Hmg protein 4
           protein.
          Length = 697

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/41 (41%), Positives = 21/41 (51%), Gaps = 13/41 (31%)
 Frame = +2

Query: 227 DVDFDLKDDIK-------------SEPEDEYESADENEISG 310
           D D+DL  DIK             SEP+DEY+S  E + SG
Sbjct: 468 DEDYDLDKDIKKKKEDKESSEGTGSEPDDEYDSGSEQDSSG 508


>AF068718-5|AAC17768.1|  320|Caenorhabditis elegans Hypothetical
           protein R01B10.4 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 10/26 (38%), Positives = 17/26 (65%)
 Frame = -2

Query: 178 LRLVPRSGPSRFRVTFSLHRINHFLK 101
           L+ + R GP   ++ F+L  +NHF+K
Sbjct: 184 LQFLGRGGPKYIQILFALVYLNHFMK 209


>AC024791-4|AAK95890.1| 1186|Caenorhabditis elegans Msh (muts
           homolog) family protein 6 protein.
          Length = 1186

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 21/75 (28%), Positives = 37/75 (49%), Gaps = 3/75 (4%)
 Frame = +2

Query: 194 KWYMTSAPSGQDVDFDLKDDIKSEPEDEYESADENEI-SGLPDLSLYEHELSA--ALDYS 364
           K  + S+  G+D D D  +D + +  +E+ES+DE+E      D  + E   S   +    
Sbjct: 75  KVVVCSSSEGEDDDGD--EDFEMKEAEEHESSDESEADENASDCEVVESPESTPQSTPKR 132

Query: 365 GGWRPLASHLQLDNT 409
           GG + ++  L  +NT
Sbjct: 133 GGKKKISKPLLAENT 147


>Z48009-1|CAA88076.1|  329|Caenorhabditis elegans Hypothetical
           protein AH6.2 protein.
          Length = 329

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/37 (32%), Positives = 18/37 (48%)
 Frame = +3

Query: 351 RWTTPAGGGRSRHTCSSTTPRGTARSPARREPCSNIL 461
           +W      GR++H  SST P     S  ++E C  I+
Sbjct: 18  KWDQGTYAGRAKHFFSSTNPLTLFSSRIQQEKCKEIV 54


>Z47358-10|CAA87438.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 116 DSVKAEGDTESAWSRARDKPEIRNIMKWYMTSAPSGQDVDFD 241
           D   ++   +SAW+  +DK   RN+ ++     P GQ+   D
Sbjct: 379 DFANSDYGEDSAWAALKDKCFDRNVQQYTYQFCPFGQNTQKD 420


>Z47356-9|CAA87420.1|  507|Caenorhabditis elegans Hypothetical
           protein ZK1307.8 protein.
          Length = 507

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/42 (28%), Positives = 21/42 (50%)
 Frame = +2

Query: 116 DSVKAEGDTESAWSRARDKPEIRNIMKWYMTSAPSGQDVDFD 241
           D   ++   +SAW+  +DK   RN+ ++     P GQ+   D
Sbjct: 379 DFANSDYGEDSAWAALKDKCFDRNVQQYTYQFCPFGQNTQKD 420


>Z81534-3|CAB04347.3|  328|Caenorhabditis elegans Hypothetical
           protein F37H8.4 protein.
          Length = 328

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/37 (35%), Positives = 18/37 (48%)
 Frame = +3

Query: 351 RWTTPAGGGRSRHTCSSTTPRGTARSPARREPCSNIL 461
           +W+     GR RH  + T P     S AR+E C  I+
Sbjct: 18  QWSQRTYYGRVRHFFTLTNPLTLTSSVARQEQCRQIV 54


>AL132853-1|CAB60440.1|  234|Caenorhabditis elegans Hypothetical
           protein Y80D3A.3 protein.
          Length = 234

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 12/26 (46%), Positives = 16/26 (61%)
 Frame = -1

Query: 179 SPACPALWTKPIPCHLQPSPNQPFSQ 102
           SPA PA +  P PC++   PNQ + Q
Sbjct: 50  SPAYPAAYQAPSPCYV-ADPNQLYYQ 74


>AL032626-2|CAA21539.1|  571|Caenorhabditis elegans Hypothetical
           protein Y37D8A.2 protein.
          Length = 571

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 14/43 (32%), Positives = 26/43 (60%), Gaps = 3/43 (6%)
 Frame = +2

Query: 242 LKDDIKSEPEDEY---ESADENEISGLPDLSLYEHELSAALDY 361
           ++ +I+  PEDEY    +   N++ GL  +  YE++L A +D+
Sbjct: 132 MEQEIRENPEDEYWQQVNLTVNQLFGL--IHGYENQLGAEIDF 172


>AC024214-8|AAF36070.2|  296|Caenorhabditis elegans Hypothetical
           protein Y77E11A.9 protein.
          Length = 296

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 13/30 (43%), Positives = 16/30 (53%), Gaps = 2/30 (6%)
 Frame = -1

Query: 218 TALT--SCTTS*CFLSPACPALWTKPIPCH 135
           T+LT   C T+ CF SPAC   W     C+
Sbjct: 17  TSLTWDGCLTA-CFYSPACVMAWQNDSTCY 45


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,132,325
Number of Sequences: 27780
Number of extensions: 202595
Number of successful extensions: 889
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 811
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 887
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)