Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C18
         (491 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    24   0.76 
U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive o...    22   4.1  
AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin ...    22   4.1  
EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle pr...    21   5.4  
AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.              21   9.4  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 24.2 bits (50), Expect = 0.76
 Identities = 10/19 (52%), Positives = 12/19 (63%)
 Frame = +2

Query: 227 DVDFDLKDDIKSEPEDEYE 283
           D+D  +   IKSEP D YE
Sbjct: 247 DIDHKMLTPIKSEPIDAYE 265


>U70841-1|AAC47455.1|  377|Apis mellifera ultraviolet sensitive
           opsin protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 393 RCDASGRHPPE*SSAALSSCSYKLRS 316
           RC   G H PE +S A S+ + K+++
Sbjct: 350 RCKWMGIHEPETTSDATSAQTEKIKT 375


>AF004168-1|AAC13417.1|  377|Apis mellifera blue-sensitive opsin
           protein.
          Length = 377

 Score = 21.8 bits (44), Expect = 4.1
 Identities = 10/26 (38%), Positives = 16/26 (61%)
 Frame = -3

Query: 393 RCDASGRHPPE*SSAALSSCSYKLRS 316
           RC   G H PE +S A S+ + K+++
Sbjct: 350 RCKWMGIHEPETTSDATSAQTEKIKT 375


>EF531707-1|ABP57431.1|  138|Apis mellifera structural cuticle
           protein protein.
          Length = 138

 Score = 21.4 bits (43), Expect = 5.4
 Identities = 9/30 (30%), Positives = 15/30 (50%)
 Frame = +2

Query: 218 SGQDVDFDLKDDIKSEPEDEYESADENEIS 307
           SGQ    D +  + S+  D Y + D  ++S
Sbjct: 57  SGQPKQVDNETPVVSQGSDSYTAPDGQQVS 86


>AB231585-1|BAE17127.1|  898|Apis mellifera Mahya protein.
          Length = 898

 Score = 20.6 bits (41), Expect = 9.4
 Identities = 10/25 (40%), Positives = 14/25 (56%)
 Frame = +1

Query: 19  KGTKLELTRWGV*N*WIPRAAEFGR 93
           K T   LT+WG  N  I ++  FG+
Sbjct: 833 KATSPNLTKWGNPNRPIVQSGIFGK 857


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 122,513
Number of Sequences: 438
Number of extensions: 2416
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 13544190
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)