Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C17
(620 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces... 27 1.7
SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyce... 27 1.7
SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual 26 3.8
SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr... 26 5.1
SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr 1|... 26 5.1
SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1 |Sc... 26 5.1
SPAC30C2.06c |dml1||mitochondrial genome maintenance protein |Sc... 26 5.1
SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit Prp31|S... 25 6.7
SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein homolog|Schizosacch... 25 8.8
>SPBC1711.11 |||autophagy associated protein |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 390
Score = 27.5 bits (58), Expect = 1.7
Identities = 12/31 (38%), Positives = 17/31 (54%)
Frame = +2
Query: 443 RFANQILSYGAELDSDHPGFTDPVYRARRKY 535
R + +SY E +SD P F D + RR+Y
Sbjct: 15 RSGDTFVSYEIETESDLPVFEDKKFSVRRRY 45
>SPAC22F3.06c |lon1||Lon protease homolog Lon1|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1067
Score = 27.5 bits (58), Expect = 1.7
Identities = 17/46 (36%), Positives = 23/46 (50%), Gaps = 1/46 (2%)
Frame = +2
Query: 374 ISRNYKDNRSAVPWFPRRIRDLDRFANQILSYGAE-LDSDHPGFTD 508
I+RNY D + +PW R + + D L + E LD DH G D
Sbjct: 512 ITRNYLDWITQLPWGKRSVENFD------LDHAKEVLDRDHYGLKD 551
>SPBC16G5.05c |||MSP domain|Schizosaccharomyces pombe|chr 2|||Manual
Length = 383
Score = 26.2 bits (55), Expect = 3.8
Identities = 26/90 (28%), Positives = 36/90 (40%), Gaps = 5/90 (5%)
Frame = -3
Query: 327 PKSPAPCSHSTINS*PGRLADDLDSI*LRFTPCEQNILRNLAKEPASS-----GVAGENN 163
P P P + S +N +D DS TP + + NL E S AG ++
Sbjct: 274 PPPPVPQNLSAVNEEFDTKKNDFDSKLPESTPAVEKVSENLGSETRESLQGAKPAAGAHS 333
Query: 162 SHVDLVESRPSRM*LPPSINLGLSDGEIVG 73
S L + +PS PS + G S E G
Sbjct: 334 SDNALEQIKPSYS-ADPSSSTGASLTESPG 362
>SPAC6G10.09 |||glucosidase I Gls1 |Schizosaccharomyces pombe|chr
1|||Manual
Length = 808
Score = 25.8 bits (54), Expect = 5.1
Identities = 12/30 (40%), Positives = 16/30 (53%)
Frame = +2
Query: 308 HGAGDFGTALEELKKNVGYLNIISRNYKDN 397
H +F EE +K GY N + RN +DN
Sbjct: 609 HFVAEFLGETEEAEKLAGYENAMLRNLEDN 638
>SPAC20G4.02c |fus1||formin Fus1|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1372
Score = 25.8 bits (54), Expect = 5.1
Identities = 16/44 (36%), Positives = 24/44 (54%)
Frame = +2
Query: 86 PSDKPKLMEGGNYIREGRDSTKSTWLLFSPATPDEAGSLARFLS 217
PS K + E + I E + + K+T L++ PDE S ARF +
Sbjct: 1201 PSGKSMVDELNSDITELKTTLKTTLLMYGE-NPDEPTSSARFFN 1243
>SPBC1347.01c |rev1|SPBC215.16c|deoxycytidyl transferase Rev1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 935
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/55 (25%), Positives = 29/55 (52%)
Frame = +2
Query: 29 IYRGMDIQVENDFLKPTISPSDKPKLMEGGNYIREGRDSTKSTWLLFSPATPDEA 193
++ G+ I + N + KP+ + + + GG +I+ T ++L+ S TP +A
Sbjct: 63 LFHGLAIAI-NGYTKPSYTELRQMIVSNGGTFIQYVDGKTSISYLVCSFLTPSKA 116
>SPAC30C2.06c |dml1||mitochondrial genome maintenance protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 465
Score = 25.8 bits (54), Expect = 5.1
Identities = 14/40 (35%), Positives = 20/40 (50%), Gaps = 1/40 (2%)
Frame = +2
Query: 8 LVQTLPFIYRGMDIQVENDFLKPTI-SPSDKPKLMEGGNY 124
LV + F+ D +N+ L + SP D L+EG NY
Sbjct: 348 LVSSASFVNVAQDYSQQNNCLFGVVRSPKDNQGLLEGKNY 387
>SPBC119.13c |prp31||U4/U6 x U5 tri-snRNP complex subunit
Prp31|Schizosaccharomyces pombe|chr 2|||Manual
Length = 518
Score = 25.4 bits (53), Expect = 6.7
Identities = 15/48 (31%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 29 IYRGMDIQVENDFLKPTIS---PSDKPKLMEGGNYIREGRDSTKSTWL 163
+ R ++ +E KPT++ P D+PK GG IR+ ++ T L
Sbjct: 348 VERKIEKLLEPPSQKPTVALPVPDDRPKRRRGGRRIRKMKEQYAVTEL 395
>SPBC28E12.06c |lvs1|SPBC3H7.16|beige protein
homolog|Schizosaccharomyces pombe|chr 2|||Manual
Length = 2609
Score = 25.0 bits (52), Expect = 8.8
Identities = 13/33 (39%), Positives = 18/33 (54%), Gaps = 1/33 (3%)
Frame = -1
Query: 407 RQICCL-YNFLI*YSSSRHFFLILQEQCRSHQH 312
+ IC L +FL +S H FLIL + + H H
Sbjct: 1006 QSICSLGSSFLSKFSQKFHGFLILHDNLKDHIH 1038
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,594,619
Number of Sequences: 5004
Number of extensions: 53260
Number of successful extensions: 139
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 137
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 139
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 273658928
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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