Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= I10A02NGRL0007_C17
(620 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
03_05_0761 - 27515441-27515650,27515967-27516074,27516666-275168... 31 0.74
05_04_0267 - 19570478-19571122 30 1.7
08_02_1382 + 26565137-26565210,26565330-26565468,26565489-265656... 29 2.3
05_03_0030 + 7529814-7530257,7530409-7530462,7531605-7532793,753... 29 2.3
03_05_0626 + 26233178-26233233,26234083-26234284,26234800-262349... 29 2.3
10_08_0962 + 21880919-21880983,21881100-21881487,21881807-218819... 29 3.0
10_01_0266 + 2816391-2818898,2818934-2819162,2819369-2819444,281... 29 3.0
03_05_0142 - 21217375-21217518,21217851-21217899,21218191-212182... 29 3.0
03_02_0610 + 9834083-9834368,9834495-9834556,9834695-9834787,983... 28 5.2
02_04_0455 - 23082570-23082623,23082706-23083005,23083366-230838... 28 5.2
01_03_0018 - 11686420-11687460 28 6.9
03_01_0270 - 2085461-2086205,2086260-2086339,2086598-2086690,208... 27 9.1
>03_05_0761 -
27515441-27515650,27515967-27516074,27516666-27516839,
27517185-27517469,27517688-27517920,27519422-27520139
Length = 575
Score = 31.1 bits (67), Expect = 0.74
Identities = 15/41 (36%), Positives = 27/41 (65%)
Frame = +2
Query: 293 MVECEHGAGDFGTALEELKKNVGYLNIISRNYKDNRSAVPW 415
+V+CE G++G+ L ELKK + +LN ++ + NR ++ W
Sbjct: 243 LVKCEQWGGNYGSKLNELKK-MWFLNRVAG--QRNRGSMDW 280
>05_04_0267 - 19570478-19571122
Length = 214
Score = 29.9 bits (64), Expect = 1.7
Identities = 25/67 (37%), Positives = 34/67 (50%)
Frame = -2
Query: 334 SSAEVTSTMLAFHHKFVAGPSRRRSRLDMTKVYAMRAKYTKESR*RASLVRSCR*EQQPR 155
SSAE T +A HHK A P RRR R T Y + T++ R+ + R+ PR
Sbjct: 43 SSAEATEEPVA-HHKNEADPRRRRPR--RTSRY--ESFRTEKDHPRSLMHRNFSEATPPR 97
Query: 154 RFGRITT 134
R R+T+
Sbjct: 98 RTRRVTS 104
>08_02_1382 +
26565137-26565210,26565330-26565468,26565489-26565603,
26565761-26565828,26565907-26566551,26566927-26567031,
26567115-26567465
Length = 498
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/59 (27%), Positives = 26/59 (44%)
Frame = +2
Query: 185 DEAGSLARFLSIFCSHGVNLSHIESRSSARRPGYEFMVECEHGAGDFGTALEELKKNVG 361
D G L+ IF HG++++H E + R F V G A+E ++ +G
Sbjct: 392 DRVGLLSDVTRIFREHGLSVTHAEVATRGARAANVFYVVAASGEPVEAHAVEAVRAEIG 450
>05_03_0030 +
7529814-7530257,7530409-7530462,7531605-7532793,
7532861-7533522
Length = 782
Score = 29.5 bits (63), Expect = 2.3
Identities = 16/48 (33%), Positives = 25/48 (52%), Gaps = 3/48 (6%)
Frame = +2
Query: 485 SDHPGFTDPVYRARRKYFADIGYNYKHG---QPLPHVDYTKEEIYTWG 619
S + GF+ V + ++F +G+++K PLP V T E Y WG
Sbjct: 370 SSYIGFSASVNSPKTRHFI-LGWSFKENGRVPPLPSVPVTDPETYGWG 416
>03_05_0626 +
26233178-26233233,26234083-26234284,26234800-26234968,
26235767-26238768
Length = 1142
Score = 29.5 bits (63), Expect = 2.3
Identities = 18/54 (33%), Positives = 28/54 (51%), Gaps = 1/54 (1%)
Frame = +2
Query: 449 ANQILSYGAELDSDHPGFTDPVYRARRKYFADIGYNYKHGQPLPH-VDYTKEEI 607
A+++ S G P FTDP+ A R + +++K Q +PH D K+EI
Sbjct: 841 ASKVHSEGTRSTLSRPSFTDPLVTAERLHSPSDVHDHKEPQ-IPHGHDTLKDEI 893
>10_08_0962 +
21880919-21880983,21881100-21881487,21881807-21881931,
21882374-21882374,21882891-21883115,21888956-21889083,
21889176-21889227,21890205-21890351,21890444-21890566,
21890648-21890722,21890812-21890931,21892546-21892632,
21893115-21893183,21893262-21893353,21893465-21893584,
21893725-21893767,21893848-21893910,21894091-21894162,
21894247-21894291,21894354-21894424,21894508-21894573,
21894715-21894799
Length = 753
Score = 29.1 bits (62), Expect = 3.0
Identities = 11/16 (68%), Positives = 13/16 (81%)
Frame = -2
Query: 295 HKFVAGPSRRRSRLDM 248
HK+ AGPSR+RS L M
Sbjct: 605 HKYTAGPSRKRSELSM 620
>10_01_0266 +
2816391-2818898,2818934-2819162,2819369-2819444,
2819776-2819830,2822042-2822110,2823077-2823321,
2824029-2824065
Length = 1072
Score = 29.1 bits (62), Expect = 3.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = -1
Query: 371 YSSSRHFFLILQEQCRSHQHHARIPP*IRSRAV 273
Y + F L+L SH HH +P +R AV
Sbjct: 41 YDPIKQFLLLLPSNTHSHHHHLSLPASLRRDAV 73
>03_05_0142 -
21217375-21217518,21217851-21217899,21218191-21218258,
21218368-21218413,21218548-21218641,21218775-21218837,
21219018-21219171,21219414-21219476,21219568-21219681,
21219779-21219844,21220813-21220870,21221859-21221932,
21222045-21222110,21223139-21223187,21223483-21223550,
21223660-21223705,21223908-21224001,21224117-21224179,
21224290-21224412,21224503-21224536,21224906-21224968,
21225825-21225911,21226293-21226370
Length = 587
Score = 29.1 bits (62), Expect = 3.0
Identities = 22/76 (28%), Positives = 35/76 (46%)
Frame = -3
Query: 228 EQNILRNLAKEPASSGVAGENNSHVDLVESRPSRM*LPPSINLGLSDGEIVGFRKSFST* 49
E N + A + S+G + + +SRPS PP+ +L E F FST
Sbjct: 296 EVNPFADKASKGGSAGQSSYSGGAFYTTQSRPSA---PPATHLSPLPPEPADFYNDFSTP 352
Query: 48 ISIPL*INGNVCTRCK 1
+ IP+ + ++ TR K
Sbjct: 353 VDIPMDTSKDMKTREK 368
>03_02_0610 +
9834083-9834368,9834495-9834556,9834695-9834787,
9835689-9835805,9835972-9836055,9836198-9836293,
9836368-9836445,9836548-9836637,9836733-9836800,
9836940-9837021,9838203-9838289
Length = 380
Score = 28.3 bits (60), Expect = 5.2
Identities = 16/47 (34%), Positives = 24/47 (51%)
Frame = +2
Query: 140 DSTKSTWLLFSPATPDEAGSLARFLSIFCSHGVNLSHIESRSSARRP 280
D T ++FS + G L + L +F +NL+ IESR +RP
Sbjct: 268 DKPFKTSIVFS--LEEGPGQLFKALGVFALREINLTKIESRPHKKRP 312
>02_04_0455 -
23082570-23082623,23082706-23083005,23083366-23083859,
23083953-23084139,23084359-23084394,23084550-23084688,
23085589-23085596
Length = 405
Score = 28.3 bits (60), Expect = 5.2
Identities = 12/26 (46%), Positives = 17/26 (65%)
Frame = +2
Query: 50 QVENDFLKPTISPSDKPKLMEGGNYI 127
+V + F T+ PSD+P L +GGN I
Sbjct: 335 EVLDSFYHETLLPSDRPILSQGGNEI 360
>01_03_0018 - 11686420-11687460
Length = 346
Score = 27.9 bits (59), Expect = 6.9
Identities = 23/85 (27%), Positives = 34/85 (40%), Gaps = 7/85 (8%)
Frame = +2
Query: 128 REGRDSTKSTWLLFSPATPDEAGSLARFLSIFCSHGVNL-----SHIES--RSSARRPGY 286
R+ +D S W P+ G + +FC GV+L H+ + R RPG
Sbjct: 173 RDPKDCLVSLWHFLDAQRPEPRGDVGEDFRLFCD-GVSLVGPYWDHVLAYWRWHVERPGQ 231
Query: 287 EFMVECEHGAGDFGTALEELKKNVG 361
+ E +GD L L + VG
Sbjct: 232 VLFMTYEELSGDTLGQLRRLAEFVG 256
>03_01_0270 -
2085461-2086205,2086260-2086339,2086598-2086690,
2086774-2086881,2087012-2087101,2087234-2087275,
2087516-2087587,2090848-2090985,2091074-2092624
Length = 972
Score = 27.5 bits (58), Expect = 9.1
Identities = 12/26 (46%), Positives = 14/26 (53%)
Frame = +3
Query: 378 QEIIKTTDLPYRGSRAESATWTALPI 455
Q IKT L R +SATW LP+
Sbjct: 388 QTTIKTASLVIRSPEKKSATWDQLPV 413
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 17,779,939
Number of Sequences: 37544
Number of extensions: 383546
Number of successful extensions: 910
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 889
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 910
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1502076244
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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