Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= I10A02NGRL0007_C17
         (620 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    87   1e-19
AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.        22   5.5  
AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.        22   5.5  
AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.        22   5.5  
DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.       21   7.3  
DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholi...    21   7.3  

>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 87.4 bits (207), Expect = 1e-19
 Identities = 49/145 (33%), Positives = 78/145 (53%), Gaps = 4/145 (2%)
 Frame = +2

Query: 194 GSLARFLSIFCSHGVNLSHIESRSSARRPGYEF--MVECEHGAGDFGTALEELKKNVGYL 367
           GSLAR L    +    ++H+ESR S ++ G +F  +V+ +         +  L+++    
Sbjct: 99  GSLARILKTIENFKGTVTHVESRPS-KKEGLQFDVLVKVDMTRQYLLQLIRNLRQSSALD 157

Query: 368 NIISRNYKDNRSAV--PWFPRRIRDLDRFANQILSYGAELDSDHPGFTDPVYRARRKYFA 541
            +      DN  ++  PWFPR   DLD   + +  +  +LD +HPGF D  YRARRK+ A
Sbjct: 158 GVTL--LADNSVSIKDPWFPRHASDLDNCNHLMTKFEPDLDMNHPGFADKEYRARRKFIA 215

Query: 542 DIGYNYKHGQPLPHVDYTKEEIYTW 616
           +I + Y++G  +P V YT+ E  TW
Sbjct: 216 EIAFAYRYGDAIPTVPYTETETETW 240



 Score = 23.0 bits (47), Expect = 2.4
 Identities = 10/24 (41%), Positives = 15/24 (62%)
 Frame = -2

Query: 277 PSRRRSRLDMTKVYAMRAKYTKES 206
           P+RRRS +D  +   +  K TK+S
Sbjct: 27  PARRRSLVDDARFETLVVKQTKQS 50


>AY336529-1|AAQ02340.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 350 KNVGYLNIISRNYKDNRSAVPWFPRRIRDLDR 445
           KN  YL++I RN       + W      DL++
Sbjct: 367 KNAKYLDVIERNSGATDKIIRWCTWSEGDLEK 398


>AY336528-1|AAQ02339.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 350 KNVGYLNIISRNYKDNRSAVPWFPRRIRDLDR 445
           KN  YL++I RN       + W      DL++
Sbjct: 367 KNAKYLDVIERNSGATDKIIRWCTWSEGDLEK 398


>AY217097-1|AAO39761.1|  712|Apis mellifera transferrin protein.
          Length = 712

 Score = 21.8 bits (44), Expect = 5.5
 Identities = 10/32 (31%), Positives = 15/32 (46%)
 Frame = +2

Query: 350 KNVGYLNIISRNYKDNRSAVPWFPRRIRDLDR 445
           KN  YL++I RN       + W      DL++
Sbjct: 367 KNAKYLDVIERNSGATDKIIRWCTWSEGDLEK 398


>DQ288391-1|ABC41341.1|  630|Apis mellifera vasa protein protein.
          Length = 630

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 25/89 (28%), Positives = 43/89 (48%), Gaps = 14/89 (15%)
 Frame = +2

Query: 161 LLFSPATPDEAGSLA-RFLS--IFCSHG--------VNLSHIESRSSARRPGYEFMVECE 307
           L+FS   PDE   LA RFL+  +F + G        V  +  E   + ++   + ++E E
Sbjct: 386 LMFSATFPDEVQHLARRFLNNYLFLAVGIVGGACSDVEQNFYEVARNKKKDLLKEILERE 445

Query: 308 HGAGDFGTAL--EELKKNVGYLNI-ISRN 385
           + +G  G  L   E+KK   ++ + +S N
Sbjct: 446 NDSGTLGGTLVFVEMKKKADFIAVFLSEN 474


>DQ026037-1|AAY87896.1|  431|Apis mellifera nicotinic acetylcholine
           receptor alpha9subunit protein.
          Length = 431

 Score = 21.4 bits (43), Expect = 7.3
 Identities = 5/16 (31%), Positives = 10/16 (62%)
 Frame = +3

Query: 18  RCRLSIGEWIFKSKMI 65
           RCR++ G W+   + +
Sbjct: 182 RCRINFGSWVHSGEEV 197


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 180,927
Number of Sequences: 438
Number of extensions: 3594
Number of successful extensions: 12
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 11
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 18460203
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)